LIST OF AVAILABLE CAENORHABDITIS SPECIES and the state of their genome projects

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See RhabditinaDB for a comprehensive morphological and taxonomic database of Rhabditina, including Caenorhabditis

Species number Reference strain Repro- duction Collector Location Date Isolated by Supergroup (annotation incomplete) Group (annotation incomplete) Geographic distribution and available isolates (lab) Inbred strain Genome Data (WORMBASE or other) Publications (incomplete) Other strains sequenced & other sequence data
elegans a N2 H/M - - - - Elegans world-wide (mostly temperate) distribution, 100s of isolates N.A. SEQUENCED Sanger WashU WORMBASE C. elegans Sequencing Consortium 1998 Science >400 wild isolates sequenced, see CeNDR
briggsae b AF16 H/M - - - - Elegans world-wide distribution, 100s of isolates N.A. SEQUENCED WashU WORMBASE Stein et al. 2003 37 wild isolates sequenced 30x (Cutter lab)
japonica c F/M - - - - Elegans Japonica isolates from Japan (Yoshiga/Cutter) DF5080 SEQUENCED WashU WORMBASE - -
remanei d F/M - - - - Elegans USA/Canada, Europe, Japan, Taiwan, 100s of isolates PB4641, PX356, PX349 SEQUENCED WashU, Phillips WORMBASE Fierst et al. 2015 approx 35 wild isolates sequenced
drosophilae f DF5077 F/M - - - - Drosophilae rotting saguaro cactus in Arizona, a few isolates DF5112 IN SEQUENCING Blaxter - - -
plicata g SB355 F/M - - - - base - - SEQUENCED Blaxter Caenorhabditis DB - -
monodelphis 1 SB341 F/M J. Raschka Berlin, Germany 2001 W. Sudhaus base A second isolate from Norway (Félix) JU1667 SEQUENCED Blaxter Caenorhabditis DB Slos et al. BMC Zool. 2017 -
sp. 2 2 DF5070 F/M S. Wirth Corsica, France Oct 2001 W. Sudhaus Drosophilae (sister of drosophilae) 1 single isolate - IN SEQUENCING Blaxter - - -
angaria 3 PS1010 F/M - - 1990 - Drosophilae Angaria 3 isolates from Florida USA - SEQUENCED CalTech WORMBASE Mortazavi et al. -
brenneri 4 F/M - - - - Elegans Elegans tropical, ~30 isolates (Felix, Cutter, Braendle) PB2801, VX223-225, VX227 SEQUENCED WashU WORMBASE - VX strains sequenced but not yet assembled (Cutter lab); RNA seq for 10 isolates http://www.ncbi.nlm.nih.gov/sra/?term=SRP042651+Caenorhabditis
sinica 5 F/M M.-A. Félix Chengyang, Guangxi, China 6 May 2005 M.-A. Félix Elegans Briggase Isolates from China, Vietnam (Cutter, Ailion, Félix) JU800 SEQUENCED Cutter Blaxter WORMBASE - -
portoensis 6 EG4788 F/M M. Ailion, A.-J. Rodrigues Amares, Portugal 28 Mar 2007 M. Ailion Drosophilae super group Portugal, Spain, France, Ireland (Ailion, Félix, Braendle) EG5626 Sequencing_planned Blaxter - - -
afra 7 JU1199 F/M M. Herrmann Begoro, Ghana Jun 2007 M.-A. Félix Japonica group Japonica 2 isolates from West Africa (Félix) JU1286 SEQUENCED Blaxter Caenorhabditis DB - -
sp. 8 8 QX1182 F/M M. Rockman Backyard of 93 Mercer St., Jersey City, NJ, USA 28 Jul 2007 M. Rockman Angaria group Angaria Isolates from USA (Fitch), Europe (Braendle, Félix), Canada (Rockman) JU3312 IN SEQUENCING Blaxter - - -
nigoni 9 JU1325 F/M M.-A. Félix Trivandrum Zoo, Kerala, India 21 Dec 2007 M.-A. Félix Briggsae subgroup, sister of briggsae Briggsae Various wet tropical places from Yucatan to Singapore (Ailion, Félix, Inoue) JU1422 SEQUENCED Schwarz OPEN SCIENCE FRAMEWORK - -
doughertyi 10 JU1333 F/M M.-A. Félix Angela Spice Garden, Kerala, India 27 Dec 2007 M.-A. Félix Brenneri subgroup Brenneri 6 isolates from South India JU1771 SEQUENCED Blaxter Caenorhabditis DB - RNA seq for JU1328 & JU1333
tropicalis 11 JU1373 H/M V. Robert, L. Sablé Saint-Benoît, La Réunion Jan 2008 M.-A. Félix Brenneri subgroup Brenneri Common in tropical regions (not so far on the African continent, one in Asia) - SEQUENCED WashU WORMBASE - -
castelli 12 JU1426 F/M P. Châtelet Nouragues Forest, French Guiana May 2008 M.-A. Félix Angaria group Angaria Several isolates from French Guiana (Félix, Braendle, Cutter) JU1956 SEQUENCED Blaxter Caenorhabditis DB - -
virilis 13 JU1528 F/M M.-A. Félix Orsay apple orchard 9 Sep 2008 M.-A. Félix Drosophilae super group Several isolates from two locations in France JU1968 SEQUENCED Blaxter Caenorhabditis DB - -
imperialis 14 EG5716 F/M D. Ailion Moorea, French Polynesia 24 Jul 2009 M. Ailion Japonica group also Polynesia, Guadeloupe (Félix, Braendle) EG5942-EG5947 IN SEQUENCING Blaxter - - -
kamaaina 15 QG122 F/M M. Rockman Near Hanalei Bay, Kauai, Hawaii, USA 2 Aug 2009 M. Rockman Elegans super group Kauai and Maui, 2 isolates QG2076, QG2077 SEQUENCED Rockman Caenorhabditis DB -
wallacei 16 JU1873 F/M J.-B. Pénigault Sanda Center, Bali, Indonesia 11 Nov 2009 J.-B. Pénigault Brenneri subgroup 2 isolates from Indonesia (Félix) JU1898 SEQUENCED Blaxter Caenorhabditis DB -
nouraguensis 17 JU1825 F/M C. Braendle, M.-A. Félix Nouragues Forest, French Guiana 21 Nov 2009 C. Braendle, M.-A. Félix Japonica group Many isolates from French Guiana JU2079 SEQUENCED Blaxter Caenorhabditis DB - additional strains sequenced
macrosperma 18 JU1857 F/M C. Braendle, M.-A. Félix Nouragues Forest, French Guiana 23 Nov 2009 C. Braendle, M.-A. Félix Japonica group A few isolates from Nouragues, French Guiana JU2083 SEQUENCED Cutter Caenorhabditis DB - -
yunquensis 19 EG6142 F/M S. Dalton El Yunque, Puerto Rico 28 Mar 2010 S. Dalton, M. Ailion Japonica group Puerto Rico XZ1517-XZ1520 IN SEQUENCING Blaxter - - -
guadeloupensis 20 NIC113 F/M C. Braendle Soufrière Forest trail, Guadeloupe Mar 2010 C. Braendle Drosophilae supergroup Guadeloupe SEQUENCED_draft Blaxter Caenorhabditis DB - resequencing required
parvicauda 21 NIC134 F/M C. Gimond Island of Sainte Marie, Madagascar Dec 2010 C. Braendle base Also Polynesia, Thailand and Caribbean (Félix) NIC534 SEQUENCED Blaxter Caenorhabditis DB BIORXIV -
latens 23 VX88 F/M G.-X. Wang Jiufeng Village, Wuhan City, Hubei Province, China 27 Oct 2009 G.-X. Wang Briggsae subgroup, sister of C. remanei Several isolates from China (Cutter) PX534, PX573, PX574, PX580 SEQUENCED Phillips Caenorhabditis DB - -
sp. 24 24 QG555 F/M A. Paaby Santa Barbara, USA July 2011 A. Paaby Angaria group, sister of sp. 8 Angaria Isolates from California, Panama, Mexico (Rockman, Félix) IN SEQUENCING Blaxter - - -
sp. 25 25 ZF1222 F/M A. Seah, T. Inoue Singapore 3 Sep 2011 T. Inoue Japonica group Japonica 2 isolates from Singapore ZF1457 IN SEQUENCING Blaxter - - -
zanzibari 26 JU2161 F/M M.-A. Félix Zanzibar, Tanzania 9 Mar 2012 M.-A. Félix Briggsae subgroup, close relative of C. sinica 5 isolates from Zanzibar JU2190 SEQUENCED Blaxter Caenorhabditis DB BIORXIV -
sp. 27 27 QX2263 F/M - Buenos Aires, Argentina 2 Mar 2012 E. Andersen Drosophilae supergroup, sister of portoensis Argentina IN SEQUENCING Blaxter - - -
panamensis 28 QG702 F/M M. Rockman Barro Colorado Island, Panama 23 Apr 2012 M. Rockman Japonica group Japonica several isofemale lines from Panama QG2080, QG2081 SEQUENCED Rockman Caenorhabditis DB BIORXIV -
becei 29 QG704 F/M M. Rockman Barro Colorado Island, Panama 25 Apr 2012 M. Rockman Japonica group, sister of nouraguensis Japonica many isofemale lines from Panama QG2082, QG2083 SEQUENCED Rockman Caenorhabditis DB BIORXIV -
sp. 30 30 DF5152 F/M - Gallon Jug, Belize 15 Nov 2012 K. Kiontke Drosophilae subgroup 4 isofemale lines from Belize ongoing (K. Kiontke) IN SEQUENCING Blaxter - - -
uteleia 31 JU2469 F/M - Madre de Dios, Peru Jan 2013 L. Frézal May branch basally within the Elegans supergroup, see Slos et al. 2 isolates from Peru JU2585 SEQUENCED Blaxter Caenorhabditis DB BIORXIV -
sulstoni 32 SB454 F/M - East Africa? Feb 2013 W. Sudhaus Japonica group, sister of afra Japonica 1 isolate, from the gut of the millipede Archispirostreptus gigas JU2788 SEQUENCED Blaxter Caenorhabditis DB BIORXIV -
sp. 33 33 BRC20065 F/M J. Wang Taiwan 24 May 2012 J. Wang Elegans Briggsae 1 isolate from Taiwan BRC20066 IN SEQUENCING Wang Tsai - - -
inopinata 34 NK74SC F/M N. Kanzaki Shigaki Island, Japan May 2013 N. Kanzaki Elegans Elegans supergroup, with C. sp. 35 sister of C. elegans 1 isolate from Japan. Associated with fig wasps and Ficus septica - SEQUENCED Kanzaki, Kikuchi Caenorhabditis DB - -
sp. 35 35 DF5171 F/M - Banda Ache, Indonesia Aug 2013 N. Kanzaki Elegans supergroup, with C. sp. 34 sister of C. elegans 2 Isolates from Indonesia, associated with Ficus hispida - IN SEQUENCING Kanzaki, Kikuchi - - -
sp. 36 36 NK02NV F/M N. Kanzaki Tokyo, Japan Apr 2013 N. Kanzaki Japonica group Japonica 1 isolate from Japan. Associated with the weevil Niphades variegatus - IN SEQUENCING Kanzaki, Kikuchi - - -
sp. 37 37 NIC394 F/M C. Braendle, A. Cutter, R. Jovelin, N. Callemeyn Nouragues National Reserve, French Guiana 18 Apr 2013 C. Braendle Angaria group Angaria 1 isolate from French Guiana - IN SEQUENCING Blaxter - - -
quiockensis 38 JU2745 F/M F. Besnard Guadeloupe (Basse Terre) 09 June 2014 F. Besnard Angaria group Angaria 1 isolate from Guadeloupe JU2809 SEQUENCED Blaxter Caenorhabditis DB BIORXIV -
waitukubuli 39 NIC564 F/M C. Braendle Dominica 13 May 2014 C. Braendle Japonica group Japonica 1 isolate from Dominique - SEQUENCED Blaxter Caenorhabditis DB BIORXIV -
tribulationis 40 JU2774 F/M J.-B. Pénigault Danbulla, Australia 08 August 2014 L. Frézal Briggsae subgroup, close relative of C. sinica Briggsae 5 isolates from Australia, in fresh or rotting figs JU2818 SEQUENCED Blaxter Caenorhabditis DB BIORXIV -
sp. 41 41 BRC20276 F/M - Solomon Islands October 2014 J. Wang Briggsae subgroup, sister species of C. sp. 40 Briggsae 2 isolates from Solomon Islands - IN SEQUENCING Wang Tsai - - -
sp. 42 42 NIC1040 F/M C. Braendle/A. Cutter Nouragues Forest, French Guiana August 2014 C. Braendle Drosophilae super group Drosophilae one isolate from French Guiana - IN SEQUENCING Blaxter - - -
vivipara 43 NIC1070 F/M C. Gosse Chichén Itzá, Yucatán, Mexico 17 October 2014 C. Braendle Drosophilae super group Drsophilae 2 isolates from Mexico; in orange berries NIC1581 SEQUENCED_draft Blaxter Caenorhabditis DB BIORXIV resequencing required
sp. 44 44 BRC20300 F/M J. Wang Shihting mountain near Taipei City, Taiwan Dec 2014 J. Wang sister species of C. brenneri one isolate from Taiwan; in flowers - IN SEQUENCING Wang Tsai - - -
sp. 45 45 NIC759 F/M C. Braendle Sylvania, Dominica 16 May 2014 C. Braendle sister species of C. guadeloupensis one isolate from Dominica; in Cecropia fruit - IN SEQUENCING Blaxter - - -
sp. 46 46 NIC1120 F/M C. Braendle Macchu Picchu, Aguas Calientes, Peru 7 April 2015 C. Braendle Japonica group Japonica one isolate from Peru - Sequencing_planned Blaxter - - -
sp. 47 47 NIC1127 F/M C. Braendle Tambopata region, Amazon, Peru 7 April 2015 C. Braendle Angaria group Angaria one isolate from Peru - Sequencing_planned Blaxter - - -
sp. 48 48 BRC20359 F/M J. Wang Khao Yai National park, Thailand 4 May 2015 J. Wang sister of C. brenneri Brenneri one isolate from Thailand - Sequencing_planned Blaxter - - -
sp. 49 49 BRC20376 F/M J. Wang Solomon Islands - J. Wang Japonica group? Japonica one isolate Solomon Islands - Sequencing_planned Blaxter - - -
sp. 50 50 BRC20387 F/M Dai near Taipei City, Taiwan 18 October 2015 J. Wang Elegans Elegans two isolates from Taiwan - Sequencing_planned Blaxter - - -
sp. 51 51 QG2915 F/M M. Rockman Australia 2017 M Rockman Elegans Elegans one isolate from Australia - Sequencing_planned Blaxter - - -
sp. 52 52 QG2933 F/M M. Rockman Australia 2017 M Rockman Drosophilae one isolate from Australia - Sequencing_planned Blaxter - - -
sp. 53 53 ECA821 F/M E. Andersen Oahu, Hawaii 2017 T Crombie sister of C. kamaaina several isolates from Oahu and Kauai - Sequencing_planned Blaxter - - -
sp. 54 54 BRC20468 F/M Hsueh, Yen-Ping Miaoli County?, Taiwan 18 August 2016 J Wang Elegans one isolate from Australia - Sequencing_planned Blaxter - - -
sp. 55 55 JU3317 F/M M.-A. Félix Pugao Laozhai, Yuanyang, Yunnan, China 5 March 2018 M.-A. Félix Elegans one isolate from Yunnan, China - Sequencing_planned Blaxter - - -
sp. 56 56 JU2215 F/M M. Joron Tarapoto, Peru October 2012 L. Frézal Angaria group, close to spp. 8 and 24 Angaria one isolate from Peru (JU3313 8x inbred and very sick) Sequencing_planned Blaxter - - -


Species numbers are assigned by Karin Kiontke, NYU.

Published phylogeny, up to sp. 21:

Published phylogeny from Kiontke et al. 2011 with species names from Félix, Braendle & Cutter 2014

Updated phylogeny, up to sp. 32:

http://wormtails.bio.nyu.edu/RhabditinaDB_Images/GenusTrees/CaenorhabditisTree.png


2017 phylogeny of a subset of species, based on their genome sequences by Slos et al.

https://bmczool.biomedcentral.com/articles/10.1186/s40850-017-0013-2

See also BIORXIV