Difference between revisions of "LIST OF AVAILABLE CAENORHABDITIS SPECIES and the state of their genome projects"

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See [https://wormtails.bio.nyu.edu/fmi/webd/RhabditinaDB?homeurl=http://wormtails.bio.nyu.edu/Databases.html RhabditinaDB] for a comprehensive morphological and taxonomic database of Rhabditina, including ''Caenorhabditis''
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{| class="wikitable"
 
{| class="wikitable"
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|-
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! Species !! number !! Reference strain !! Repro- duction !! Collector !! Location !! Date !! Isolated by !! Supergroup (annotation incomplete) !! Group (annotation incomplete) !! Geographic distribution and available isolates (lab) !! Inbred strain !! Genome !! Data ([http://wormbase.org WORMBASE] or other) !! Publications (incomplete) !! Other strains sequenced & other sequence data
 +
|-
 +
| elegans || a || N2 || H/M || - || - || - || - || Elegans || Elegans || world-wide (mostly temperate) distribution, 100s of isolates || N.A. || SEQUENCED Sanger WashU || [http://wormbase.org WORMBASE] || C. elegans Sequencing Consortium 1998 Science || >400 wild isolates sequenced, see [https://www.elegansvariation.org/ CeNDR]
 +
|-
 +
| briggsae || b || AF16 || H/M || - || - || - || - || Elegans || Elegans || world-wide distribution, 100s of isolates || N.A. || SEQUENCED WashU || [http://wormbase.org WORMBASE] || [https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0000045 Stein et al. 2003] || 37 wild isolates sequenced 30x (Cutter lab)
 +
|-
 +
| japonica || c ||  || F/M || - || - || - || - || Elegans || Japonica || isolates from Japan (Yoshiga/Cutter) || DF5080 || SEQUENCED WashU || [http://wormbase.org WORMBASE] || - || -
 +
|-
 +
| remanei || d ||  || F/M || - || - || - || - || Elegans || Elegans || USA/Canada, Europe, Japan, Taiwan, 100s of isolates || PB4641, PX356, PX349 || SEQUENCED WashU, Phillips || [http://wormbase.org WORMBASE] || [https://doi.org/10.1371/journal.pgen.1005323 Fierst et al. 2015] || approx 35 wild isolates sequenced
 +
|-
 +
| drosophilae || f || DF5077 || F/M || - || - || - || - || Drosophilae ||  || rotting saguaro cactus in Arizona, a few isolates || DF5112 || SEQUENCED Blaxter || - || - || -
 +
|-
 +
| plicata || g || SB355 || F/M || - || - || - || - || base ||  || - || - || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || -
 +
|-
 +
| monodelphis  || 1 || SB341 || F/M || J. Raschka || Berlin, Germany || 2001 || W. Sudhaus || base ||  || A second isolate from Norway (Félix) || JU1667 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://bmczool.biomedcentral.com/articles/10.1186/s40850-017-0013-2 Slos et al. BMC Zool. 2017] || -
 +
|-
 +
| sp. 2 || 2 || DF5070 || F/M || S. Wirth || Corsica, France || Oct 2001 || W. Sudhaus || Drosophilae || (sister of drosophilae) || 1 single isolate || - || SEQUENCED Blaxter || - || - || -
 +
|-
 +
| angaria || 3 || PS1010 || F/M || - || - || 1990 || - || Angaria  || || 3 isolates from Florida USA || - || SEQUENCED CalTech || [http://wormbase.org WORMBASE] || [https://doi.org/10.1101/gr.111021.110 Mortazavi et al.] || -
 +
|-
 +
| brenneri || 4 ||  || F/M || - || - || - || - || Elegans || Elegans || tropical, ~30 isolates (Felix, Cutter, Braendle) || PB2801, VX223-225, VX227 || SEQUENCED WashU || [http://wormbase.org WORMBASE] || - || VX strains sequenced but not yet assembled (Cutter lab); RNA seq for 10 isolates http://www.ncbi.nlm.nih.gov/sra/?term=SRP042651+Caenorhabditis
 +
|-
 +
| sinica || 5 ||  || F/M || M.-A. Félix || Chengyang, Guangxi, China || 6 May 2005 || M.-A. Félix || Elegans || Elegans || Isolates from China, Vietnam (Cutter, Ailion, Félix) || JU800 || SEQUENCED Cutter Blaxter || [http://wormbase.org WORMBASE] || - || -
 +
|-
 +
| portoensis || 6 || EG4788 || F/M || M. Ailion, A.-J.  Rodrigues || Amares, Portugal || 28 Mar 2007 || M. Ailion || ||  || Portugal, Spain, France, Ireland (Ailion, Félix, Braendle) || EG5626 || Sequenced Blaxter || - || - || -
 +
|-
 +
| afra || 7 || JU1199 || F/M || M. Herrmann || Begoro, Ghana || Jun 2007 || M.-A. Félix || Elegans || Japonica || 2 isolates from West Africa (Félix) || JU1286 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || -
 +
|-
 +
| sp. 8 || 8 || QX1182 || F/M || M. Rockman || Backyard of 93 Mercer St., Jersey City, NJ, USA || 28 Jul 2007 || M. Rockman || Angaria || close to sp. 24 and 56|| Isolates from USA (Fitch), Europe (Braendle, Félix), Canada (Rockman) || JU3312 || SEQUENCED Blaxter || - || - || -
 +
|-
 +
| nigoni || 9 || JU1325 || F/M || M.-A. Félix || Trivandrum Zoo, Kerala, India || 21 Dec 2007 || M.-A. Félix || Elegans || Elegans, sister of briggsae || Various wet tropical places from Yucatan to Singapore (Ailion, Félix, Inoue) || JU1422 || SEQUENCED Schwarz || [https://doi.org/10.17605/osf.io/dkbwt OPEN SCIENCE FRAMEWORK] || - || -
 +
|-
 +
| doughertyi || 10 || JU1333 || F/M || M.-A. Félix || Angela Spice Garden, Kerala, India || 27 Dec 2007 || M.-A. Félix || Elegans || Elegans|| 6 isolates from South India || JU1771 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || RNA seq for JU1328 & JU1333
 +
|-
 +
| tropicalis || 11 || JU1373 || H/M || V. Robert, L. Sablé || Saint-Benoît, La Réunion || Jan 2008 || M.-A. Félix || Elegans || Elegans|| Common in tropical regions (not so far on the African continent, one in Asia) || - || SEQUENCED WashU, etc || [http://wormbase.org WORMBASE] || - || -
 +
|-
 +
| castelli || 12 || JU1426 || F/M || P. Châtelet || Nouragues Forest, French Guiana || May 2008 || M.-A. Félix || Angaria || || Several isolates from French Guiana (Félix, Braendle, Cutter) || JU1956 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || -
 +
|-
 +
| virilis  || 13 || JU1528 || F/M || M.-A. Félix || Orsay apple orchard || 9 Sep 2008 || M.-A. Félix || Drosophilae  ||  || Several isolates from two locations in France || JU1968 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || -
 +
|-
 +
| imperialis || 14 || EG5716 || F/M || D. Ailion || Moorea, French Polynesia || 24 Jul 2009 || M. Ailion || Elegans || Japonica  || also Polynesia, Guadeloupe (Félix, Braendle) || EG5942-EG5947 || SEQUENCED Blaxter || - || - || -
 +
|-
 +
| kamaaina || 15 || QG122 || F/M || M. Rockman || Near Hanalei Bay, Kauai, Hawaii, USA || 2 Aug 2009 || M. Rockman || Elegans || Elegans || Kauai and Maui, 2 isolates || QG2076, QG2077 || SEQUENCED Rockman || [http://caenorhabditis.org Caenorhabditis DB] || - || 
 +
|-
 +
| wallacei  || 16 || JU1873 || F/M || J.-B. Pénigault || Sanda Center, Bali, Indonesia || 11 Nov 2009 || J.-B. Pénigault || Elegans || Elegans  || 2 isolates from Indonesia (Félix) || JU1898 || in assembly Schwarz ||  || - || 
 +
|-
 +
| nouraguensis  || 17 || JU1825 || F/M || C. Braendle, M.-A. Félix || Nouragues Forest, French Guiana || 21 Nov 2009 || C. Braendle, M.-A. Félix || Elegans || Japonica || Many isolates from French Guiana || JU2079 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || additional strains sequenced
 +
|-
 +
| macrosperma  || 18 || JU1857 || F/M || C. Braendle, M.-A. Félix || Nouragues Forest, French Guiana || 23 Nov 2009 || C. Braendle, M.-A. Félix || Elegans || Japonica || A few isolates from Nouragues, French Guiana || JU2083 || SEQUENCED Cutter || [http://caenorhabditis.org Caenorhabditis DB] || - || -
 +
|-
 +
| yunquensis  || 19 || EG6142 || F/M || S. Dalton || El Yunque, Puerto Rico || 28 Mar 2010 || S. Dalton, M. Ailion || Elegans || Japonica || Puerto Rico || XZ1517-XZ1520 || SEQUENCED Blaxter || - || - || -
 +
|-
 +
| guadeloupensis  || 20 || NIC113 || F/M || C. Braendle || Soufrière Forest trail, Guadeloupe || Mar 2010 || C. Braendle || Guadeloupensis ||  || Guadeloupe ||  || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || resequencing required
 +
|-
 +
| parvicauda || 21 || NIC134 || F/M || C. Gimond || Island of Sainte Marie, Madagascar || Dec 2010 || C. Braendle || base ||  || Also Polynesia, Thailand and Caribbean (Félix) || NIC534 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || -
 +
|-
 +
| latens || 23 || VX88 || F/M || G.-X. Wang || Jiufeng Village, Wuhan City, Hubei Province, China || 27 Oct 2009 || G.-X. Wang || Elegans || Elegans, sister of C. remanei || Several isolates from China (Cutter) || PX534, PX573, PX574, PX580 || SEQUENCED Phillips || [http://caenorhabditis.org Caenorhabditis DB] || - || -
 
|-
 
|-
! Species !! Reference strain !! Reproduction !! Collector !! Location !! Date !! Isolated by !! Phylogenetic affiliation !! Geographic distribution and available isolates (lab) !! Inbred strain !! Genome project
+
| sp. 24 || 24 || QG555 || F/M || A. Paaby || Santa Barbara, USA || July 2011 || A. Paaby || Angaria || close to sp. 8 and 56|| Isolates from California, Panama, Mexico (Rockman, Félix) ||  || SEQUENCED Blaxter || - || - || -
 
|-
 
|-
| '''''angaria''''' || PS1010 || F/M || || ||1990 || || ''Drosophilae'' super-group, ''Angaria'' group || 3 isolates from Florida USA || - || formerly ''C.'' sp. 3; Mortazavi et al. 2010 Genome Research, @Wormbase
+
| sp. 25 || 25 || ZF1222 || F/M || A. Seah, T. Inoue || Singapore || 3 Sep 2011 || T. Inoue || Elegans || Japonica || 2 isolates from Singapore || ZF1457 || SEQUENCED Blaxter || - || - || -
 
|-
 
|-
| '''''brenneri''''' || || F/M || || || || || ''Elegans'' group ||tropical, ~30 isolates (Felix, Cutter, Braendle) || PB2801 || Wash U, @Wormbase
+
| zanzibari || 26 || JU2161 || F/M || M.-A. Félix || Zanzibar, Tanzania || 9 Mar 2012 || M.-A. Félix || Elegans || Elegans || 5 isolates from Zanzibar || JU2190 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || -
 
|-
 
|-
| '''''briggsae''''' || AF16 || '''H/M''' || || || ||  || ''Elegans'' group  || world-wide distribution, 100s of isolates || N.A. || Stein et al. 2003 PLoS Biology, @Wormbase
+
| sp. 27 || 27 || QX2263 || F/M || - || Buenos Aires, Argentina || 2 Mar 2012 || E. Andersen || || Portoensis || Argentina ||  || SEQUENCED Blaxter || - || - || -
 
|-
 
|-
| '''''drosophilae''''' || DF5077 ||F/M || || || || || ''Drosophilae'' group || || ||
+
| panamensis || 28 || QG702 || F/M || M. Rockman || Barro Colorado Island, Panama || 23 Apr 2012 || M. Rockman || Elegans|| Japonica || several isofemale lines from Panama || QG2080, QG2081 || SEQUENCED Rockman || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || -
|-'''
 
| '''''elegans''''' || N2 || '''H/M''' ||  || ||  ||  || ''Elegans'' group || world-wide (mostly temperate) distribution, 100s of isolates || N.A. || ''C. elegans'' Sequencing Consortium 1998 Science, @Wormbase
 
 
|-
 
|-
| '''''japonica''''' || || F/M|| || || || || ''Elegans'' super-group, ''Japonica'' group|| isolates from Japan (Yoshiga/Cutter)|| DF5080 || Wash U, @Wormbase
+
| becei || 29 || QG704 || F/M || M. Rockman || Barro Colorado Island, Panama || 25 Apr 2012 || M. Rockman || Elegans || Japonica, sister of nouraguensis  || many isofemale lines from Panama || QG2082, QG2083 || SEQUENCED Rockman || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || -
 
|-
 
|-
| '''''plicata''''' || SB355 || F/M || ||  || || || || || ||  
+
| sp. 30 || 30 || DF5152 || F/M || - || Gallon Jug, Belize || 15 Nov 2012 || K. Kiontke || Drosophilae ||  || 4 isofemale lines from Belize || ongoing (K. Kiontke) || SEQUENCED Blaxter || - || - || -
 
|-
 
|-
| '''''remanei''''' || || F/M || ||  || || || ''Elegans'' group|| USA/Canada, Europe, Japan, Taiwan, 100s of isolates || PB4641 || Wash U,@Wormbase
+
| uteleia || 31 || JU2469 || F/M || - || Madre de Dios, Peru || Jan 2013 || L. Frézal || Guadeloupensis ||  || 2 isolates from Peru || JU2585 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || -
 
|-
 
|-
| '''sp. 1''' || SB341 || F/M || S. Wirth  || Berlin, Germany  || 2000?  || W. Sudhaus || base of ''Caenorhabditis'' || 1 single isolate || JU1667  || Félix/Blaxter preliminary assembly available-ask us ||  
+
| sulstoni || 32 || SB454 || F/M || - || East Africa? || Feb 2013 || W. Sudhaus || Elegans || Japonica, sister of afra || 1 isolate, from the gut of the millipede Archispirostreptus gigas || JU2788 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || -
 
|-
 
|-
| '''sp. 2''' || DF5070 || F/M || S. Wirth  || Corsica, France || Oct 2001 || W. Sudhaus  || ''Drosophilae'' group, sister of ''C. drosophilae''  || 1 single isolate || ||  
+
| sp. 33 || 33 || BRC20065 || F/M || J. Wang || Taiwan || 24 May 2012 || J. Wang || Elegans || Elegans || 1 isolate from Taiwan || BRC20066 || IN SEQUENCING Wang Tsai || - || - || -
 
|-
 
|-
| '''sp. 5''' || JU727|| F/M || M.-A. Félix  || Chengyang, Guangxi, China  || 6 May 2005  || M.-A. Félix  || ''Briggsae'' subgroup  || Isolates from China, Vietnam (Cutter, Ailion, Félix) || JU800 ||   Cutter/Blaxter@Wormbase 
+
| inopinata || 34 || NK74SC || F/M || N. Kanzaki || Shigaki Island, Japan || May 2013 || N. Kanzaki || Elegans || Elegans, with C. sp. 35 sister of C. elegans || 1 isolate from Japan. Associated with fig wasps and Ficus septica || - || SEQUENCED Kanzaki, Kikuchi || [http://caenorhabditis.org Caenorhabditis DB] || [https://www.nature.com/articles/s41467-018-05712-5 Kanzaki et al. Nat Comm 2019] || -
 
|-
 
|-
| '''sp. 6''' || EG4788 || F/M || M. Ailion, A.-J.  Rodrigues || Amares, Portugal || 28 Mar 2007  || M. Ailion  || ''Drosophilae'' super group || Portugal, Spain, France, Ireland (Ailion, Félix, Braendle) || EG5626  ||  
+
| sp. 35 || 35 || DF5171 || F/M || - || Banda Ache, Indonesia || Aug 2013 || N. Kanzaki || Elegans || Elegans, with C. sp. 34 sister of C. elegans || 2 Isolates from Indonesia, associated with Ficus hispida || - || IN SEQUENCING Kanzaki, Kikuchi || - || - || -
 
|-
 
|-
| '''sp. 7''' || JU1199 || F/M || M. Herrmann  || Begoro, Ghana  || Jun 2007  || M.-A. Félix  || ''Japonica'' group  || 2 isolates from West Africa (Félix) || JU1286  || Wash U CONTAMINATED WITH SP. 9 www.nematodes.org/nematodegenomes/index.php/959_Nematode_Genomes
+
| sp. 36 || 36 || NK02NV || F/M || N. Kanzaki || Tokyo, Japan || Apr 2013 || N. Kanzaki || Elegans || Japonica || 1 isolate from Japan. Associated with the weevil Niphades variegatus || - || IN SEQUENCING Kanzaki, Kikuchi || - || - || -
 
|-
 
|-
| '''sp. 8''' || QX1182 || F/M || M. Rockman || Backyard of 93 Mercer St., Jersey City, NJ, USA || 28 Jul 2007 || M. Rockman || ''Angaria'' group|| Isolates from USA (Fitch), Europe (Braendle, Félix), Canada (Rockman)  ||   ||  
+
| dolens || 37 || NIC394 || F/M || C. Braendle, A. Cutter, R. Jovelin, N. Callemeyn || Nouragues National Reserve, French Guiana || 18 Apr 2013 || C. Braendle || Angaria group || Angaria || 1 isolate from French Guiana || - || SEQUENCED Blaxter || - || - || -
 
|-
 
|-
| '''sp. 9''' || JU1325 || F/M || M.-A. Félix || Trivandrum Zoo, Kerala, India  || 21 Dec 2007 || M.-A. Félix  || ''Briggsae'' subgroup  || Various wet tropical places from Yucatan to Singapore (Ailion, Félix, Inoue)  || JU1422 || (Wash U: contaminated genomic, cDNAs OK) Resequenced by Barbara Meyer
+
| quiockensis || 38 || JU2745 || F/M || F. Besnard || Guadeloupe (Basse Terre) || 09 June 2014 || F. Besnard || Angaria|| || 1 isolate from Guadeloupe || JU2809 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || -
 
|-
 
|-
| '''sp. 10''' || JU1323 || F/M || M.-A. Félix || Angela Spice Garden, Kerala, India  || 27 Dec 2007  || M.-A. Félix  || ''Brenneri'' subgroup || 6 isolates from South India || JU1771  ||
+
| waitukubuli || 39 || NIC564 || F/M || C. Braendle || Dominica || 13 May 2014 || C. Braendle || Elegans || Japonica || 1 isolate from Dominique || - || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || -
 
|-
 
|-
| '''sp. 11''' || JU1373 || '''H/M''' || V. Robert, L. Sablé || Saint-Benoît, La Réunion || Jan 2008 || M.-A. Félix || ''Brenneri'' subgroup || Common in tropical regions (not so far on the African continent, one in Asia) || N.A. || Wash U, @Wormbase
+
| tribulationis || 40 || JU2774 || F/M || J.-B. Pénigault || Danbulla, Australia || 08 August 2014 || L. Frézal || Elegans|| Elegans || 5 isolates from Australia, in fresh or rotting figs || JU2818 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || -
 
|-
 
|-
| '''sp. 12''' || JU1426 || F/M || P. Châtelet || Nouragues Forest, French Guiana || May 2008 || M.-A. Félix || ''Angaria'' group || 2 isolates from French Guiana  || JU1956  ||
+
| sp. 41 || 41 || BRC20276 || F/M || - || Solomon Islands || October 2014 || J. Wang || Elegans || Elegans || 2 isolates from Solomon Islands || - || IN SEQUENCING Wang Tsai || - || - || -
 
|-
 
|-
| '''sp. 13''' || JU1528 || F/M || M.-A. Félix || Orsay apple orchard || 9 Sep 2008  || M.-A. Félix || ''Drosophilae'' super group || A few isolates, all from Orsay, France || JU1968 ||
+
| astrocarya || 42 || NIC1040 || F/M || C. Braendle/A. Cutter || Nouragues Forest, French Guiana || August 2014 || C. Braendle || base || || one isolate from French Guiana || - || SEQUENCED Blaxter || - || - || -
 
|-
 
|-
| '''sp. 14''' || EG5716 || F/M || D. Ailion || Moorea, French Polynesia || 24 Jul 2009  || M. Ailion || ''Japonica'' group || also Polynesia, Guadeloupe (Félix, Braendle)  || EG5942-EG5947 ||  
+
| vivipara || 43 || NIC1070 || F/M || C. Gosse || Chichén Itzá, Yucatán, Mexico || 17 October 2014 || C. Braendle || || Portoensis || 2 isolates from Mexico; in orange berries || NIC1581 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || resequencing required
 
|-
 
|-
| '''sp. 15''' || QG122 || F/M || M. Rockman  || Near Hanalei Bay, Kauai, Hawaii, USA || 2 Aug 2009 || M. Rockman || ''Elegans'' super group || Kauai and Maui, 2 isolates || QG2076, QG2077 || under assembly, Rockman
+
| sp. 44 || 44 || BRC20300 || F/M || J. Wang || Shihting mountain near Taipei City, Taiwan || Dec 2014 || J. Wang || Elegans || Elegans || one isolate from Taiwan; in flowers || - || IN SEQUENCING Wang Tsai || - || - || -
 
|-
 
|-
| '''sp. 16''' || JU1873 || F/M || J.-B. Pénigault || Sanda Center, Bali, Indonesia || 11 Nov 2009 || J.-B. Pénigault || ''Brenneri'' subgroup || 2 isolates from Indonesia (Félix) || JU1898 || Félix/Blaxter preliminary assembly available-ask us
+
| sp. 45 || 45 || NIC759 || F/M || C. Braendle || Sylvania, Dominica || 16 May 2014 || C. Braendle || Guadeloupensis || sister species of C. guadeloupensis || one isolate from Dominica; in Cecropia fruit || - || SEQUENCED Blaxter || - || - || -  
 
|-
 
|-
| '''sp. 17''' || JU1825 || F/M || C. Braendle, M.-A. Félix || Nouragues Forest, French Guiana || 21 Nov 2009 || C. Braendle, M.-A. Félix || ''Japonica'' group || Many isolates from French Guiana || JU2079 || planning Ailion
+
| sp. 46 || 46 || NIC1120 || F/M || C. Braendle || Macchu Picchu, Aguas Calientes, Peru || 7 April 2015 || C. Braendle || Elegans|| Japonica || one isolate from Peru || - || SEQUENCED Blaxter|| - || - || -
 
|-
 
|-
| '''sp. 18''' || JU1857 || F/M || C. Braendle, M.-A. Félix || Nouragues Forest, French Guiana || 23 Nov 2009 || C. Braendle, M.-A. Félix || ''Japonica'' group || A few isolates from Nouragues, French Guiana  || JU2083  ||  
+
| sp. 47 || 47 || NIC1127 || F/M || C. Braendle || Tambopata region, Amazon, Peru || 7 April 2015 || C. Braendle || Angaria || || one isolate from Peru || - || SEQUENCED Blaxter || - || - || -
 
|-
 
|-
| '''sp. 19''' || EG6142 ||F/M || S. Dalton  || El Yunque, Puerto Rico || 28 Mar 2010  || S. Dalton, M. Ailion || ''Japonica'' group  || Puerto Rico ||   ||
+
| sp. 48 || 48 || BRC20359 || F/M || J. Wang || Khao Yai National park, Thailand || 4 May 2015 || J. Wang || Elegans || Elegans || one isolate from Thailand || - || SSEQUENCED Blaxter || - || - || -
 
|-
 
|-
| '''sp. 20''' || NIC113 || F/M || C. Braendle || Soufrière Forest trail, Guadeloupe || Mar 2010  || C. Braendle || ''Drosophilae'' supergroup || Guadeloupe || planned Braendle ||
+
| sp. 49 || 49 || BRC20376 || F/M || J. Wang || Solomon Islands || - || J. Wang || Elegans || Japonica || one isolate Solomon Islands || - || SEQUENCED Blaxter || - || - || -
 
|-
 
|-
| '''sp. 21''' || NIC134 || F/M || C. Gimond || Island of Sainte Marie, Madagascar || Dec 2010 || C. Braendle || base of ''Caenorhabditis'' || Also Polynesia and Thailand (Félix) || planned Braendle ||  
+
| sp. 50 || 50 || BRC20387 || F/M || Dai || near Taipei City, Taiwan || 18 October 2015  ||J. Wang || Elegans || Japonica || two isolates from Taiwan || - || Sequencing_planned Blaxter || - || - || -
 
|-
 
|-
| '''sp. 23''' || VX88 || F/M || G.-X. Wang  || Jiufeng Village, Wuhan City, Hubei Province, China || 27 Oct 2009 || G.-X. Wang || ''Briggsae'' subgroup, sister of ''C. remanei'' || Several isolates from China (Cutter) || PX534, PX573, PX574, PX580 || under assembly, Cutter/Phillips
+
| sp. 51 || 51 || QG2915 || F/M || M. Rockman || Australia || 2017 || M Rockman || Elegans || Elegans || two isolates from Australia || - || SEQUENCED Blaxter || - || - || -
 
|-
 
|-
| '''sp. 24''' || QG555 || F/M || A. Paaby  || Santa Barbara, USA || July 2011 || A. Paaby || ''Angaria'' group, sister of sp. 8 || 1 isolate from California and 3 from Panama (Rockman)  ||   ||
+
| sp. 52 || 52 || QG2933 || F/M || M. Rockman || Australia || 2017 || M Rockman || ||  || one isolate from Australia || - || Sequencing_planned Blaxter || - || - || -
 
|-
 
|-
| '''sp. 25''' || ZF1222 || F/M || A. Seah, T. Inoue  || Singapore || 3 Sep 2011  || T. Inoue || ''Japonica'' group  || 2 isolates from Singapore || ongoing (Inoue)  ||
+
| sp. 53 || 53 || ECA821 || F/M || E. Andersen || Oahu, Hawaii || 2017 || T Crombie || Elegans || Elegans, sister of C. kamaaina || several isolates from Oahu and Kauai || - || SEQUENCED Blaxter || - || - || -
 
|-
 
|-
| '''sp. 26''' || JU2161 || F/M || M.-A. Félix || Zanzibar, Tanzania || 9 Mar 2012 || M.-A. Félix || ''Briggsae'' subgroup, sister of sp. 5  || 5 isolates from Zanzibar || JU2190 ||
+
| sp. 54 || 54 || BRC20468 || F/M || Hsueh, Yen-Ping || Miaoli County?, Taiwan || 18 August 2016 || J Wang || Elegans || Elegans ||  || - || SEQUENCED Blaxter|| - || - || -
 
|-
 
|-
| '''sp. 27''' || QX2263 || F/M || || Buenos Aires, Argentina  || 2 Mar 2012  || E. Andersen  || ''Drosophilae'' supergroup, sister of sp. 6  || Argentina ||   ||
+
| sp. 55 || 55 || JU3317 || F/M || M.-A. Félix || Pugao Laozhai, Yuanyang, Yunnan, China || 5 March 2018 || M.-A. Félix || Elegans || Elegans || one isolate from Yunnan, China || - ||SEQUENCED Blaxter || - || - || -
 
|-
 
|-
| '''sp. 28''' || QG702 || F/M || M. Rockman || Barro Colorado Island, Panama || 23 Apr 2012 || M. Rockman || ''Japonica'' group || several isofemale lines from Panama  || QG2080, QG2081 || under assembly, Rockman
+
| sp. 56 || 56 || JU2215 || F/M || M. Joron || Tarapoto, Peru || October 2012 || L. Frézal || Angaria || close to sp. 8 and 24|| one isolate from Peru || (JU3313 8x inbred and very sick) || SEQUENCED Blaxter || - || - ||
 +
|-
 +
| sp. 57 || 57 || QG3050 || F/M || M. Rockman || Barro Colorado Island, Panama || August 2018 || M. Rockman || near monodelphis and sonorae? || || two isolates from Panama || QG3077 || || - || - || -
 
|-
 
|-
| '''sp. 29''' ||QG704 || F/M || M. Rockman || Barro Colorado Island, Panama  || 25 Apr 2012  ||  M. Rockman  || ''Japonica'' group, sister of sp. 17 || many isofemale lines from Panama  || QG2082, QG2083 || planning Ailion, under assembly, Rockman
+
| sp. 58 || 58 || RS6130 || F/M || M. Herrmann || Bolivia || 2019 ||  M. Herrmann || || close to C. astrocarya || || JU3779 or JU3880 || sent to Blaxter || - || - || -
 
|-
 
|-
| '''sp. 30''' || DF5152  || F/M  ||   || Gallon Jug, Belize  || 15 Nov 2012 || K. Kiontke || ''Drosophilae'' subgroup  || 4 isofemale lines from Belize ||   ||   
+
| sp. 59 || 59 || RS6131 || F/M || M. Herrmann || Bolivia || 2019 || M. Herrmann || Elegans  || Japonica, close to C. becei || || JU3778 || sent to Blaxter || - || - || -
 +
|-
 +
| sp. 60 || 60 || QG3550 || F/M || M. Rockman || Costa Rica || 2019 || M. Rockman || Elegans || Japonica || one isolate || in inbreeding ||  || - || - || -
 
|-
 
|-
|| '''sp. 31''' || JU2469 || F/M || L. Frézal  || Madre de Dios, Peru || Jan 2013 || L. Frézal || 2 isolates from Peru || JU2585 ||   ||
+
| sp. 61 || 61 || JU4045 || F/M || M.-A. Félix || Sapa area, Vietnam || 2019 ||  M.-A. Félix || Elegans || Elegans || one isolate || JU4110 || || - || - || -
 
|-
 
|-
| '''sp. 32''' || SB454 || F/M || || East Africa? || Feb 2013  || W. Sudhaus || ''Japonica'' group, sister of sp. 7 || 1 isolate, from the gut of the millipede ''Archispirostreptus gigas'' || ||   
+
| sp. 62 || 62 || JU4050 || F/M || M.-A. Félix || Sapa area, Vietnam || 2019 || M.-A. Félix || Elegans || Elegans || one isolate || JU4112 ||  || - || - || -
 
|-
 
|-
| '''sp. 33''' || BRC20065 ||F/M || J. Wang || Taiwan || 24 May 2012 || J. Wang ||   ''Briggsae'' subgroup || 1 isolate from Taiwan || BRC20066 ||  
+
| sp. 63 || 63 || JU4056 || F/M || M.-A. Félix || Sapa area, Vietnam || 2019 || M.-A. Félix || Elegans  || Elegans, close to sp. 33 || one isolate || JU4113 || || - || - || -
 
|-
 
|-
| '''sp. 34''' || NK74SC || F/M || N. Kanzaki || Japan || May 2013 || N. Kanzaki ||  likely ''Drosophilae'' super group || 1 isolate from Japan. Associated with fig wasps and ''Ficus septica'' ||   ||  
+
| sp. 64 || 64 || JU4061 || F/M || M.-A. Félix || Sapa area, Vietnam || 2019 || M.-A. Félix || || Portoensis || one isolate || JU4117 ||  || - || - || -
 
|-
 
|-
| '''sp. 35''' || no designation yet || F/M ||   || Indonesia || Aug 2013 || N. Kanzaki ||  || 2 Isolates from Indonesia, associated with ''Ficus hispida'' ||   ||  
+
| sp. 65 || 65 || JU4086 || F/M || M.-A. Félix || Dalat area, Vietnam || 2019 ||  M.-A. Félix || Elegans || Elegans || four isolates from Vietnam || JU4118 ||  || - || - || -
 
|-
 
|-
| '''sp. 36''' || NK02NV || F/M || N. Kanzaki || Japan || Apr 2013 || N. Kanzaki ||   || 1 isolate from Japan. Associated with the weevil ''Niphades variegatus'' ||   ||   
+
| sp. 66 || 66 || JU4096 || F/M || M.-A. Félix || Dalat area, Vietnam || 2019 ||  M.-A. Félix || Elegans  || Elegans, close to sp. 48 and brenneri || seven isolates from Vietnam || JU4121 ||  || - || - || -
 
|-
 
|-
|    ||  ||  ||  ||  ||  ||  ||  ||  ||  || 
 
 
|}
 
|}
 +
 +
 
''Species numbers are assigned by Karin Kiontke, NYU.''   
 
''Species numbers are assigned by Karin Kiontke, NYU.''   
  
'''Published phylogeny:'''
+
'''Published phylogeny, up to sp. 21:'''
 
<gallery>
 
<gallery>
 
File:Phylogeny.png|Kiontke et al. 2011 BMC Evolutionary Biology 11: 339.
 
File:Phylogeny.png|Kiontke et al. 2011 BMC Evolutionary Biology 11: 339.
 
</gallery>
 
</gallery>
 +
'''Published phylogeny from Kiontke et al. 2011 with species names from Félix, Braendle & Cutter 2014'''
 +
<gallery>
 +
File:Phylogeny2.png|Félix, Braendle @ Cutter PLoS One 2014  http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0094723
 +
</gallery>
 +
'''Updated phylogeny, up to sp. 32:'''
 +
 +
http://wormtails.bio.nyu.edu/RhabditinaDB_Images/GenusTrees/CaenorhabditisTree.png
  
  
 +
'''2017 phylogeny of a subset of species, based on their genome sequences by Slos et al.'''
  
'''Updated phylogeny:'''
+
https://bmczool.biomedcentral.com/articles/10.1186/s40850-017-0013-2
http://wormtails.bio.nyu.edu/RhabditinaDB_Images/GenusTrees/CaenorhabditisTree.png
+
 
 +
'''See Stevens et al. 2019'''
 +
[https://onlinelibrary.wiley.com/doi/10.1002/evl3.110]
 +
 
 +
'''and the latest unpublished phylogeny'''
 +
[http://caenorhabditis.org/?page_id=151]. Thank you Lewis!

Latest revision as of 16:08, 29 July 2020

See RhabditinaDB for a comprehensive morphological and taxonomic database of Rhabditina, including Caenorhabditis

Species number Reference strain Repro- duction Collector Location Date Isolated by Supergroup (annotation incomplete) Group (annotation incomplete) Geographic distribution and available isolates (lab) Inbred strain Genome Data (WORMBASE or other) Publications (incomplete) Other strains sequenced & other sequence data
elegans a N2 H/M - - - - Elegans Elegans world-wide (mostly temperate) distribution, 100s of isolates N.A. SEQUENCED Sanger WashU WORMBASE C. elegans Sequencing Consortium 1998 Science >400 wild isolates sequenced, see CeNDR
briggsae b AF16 H/M - - - - Elegans Elegans world-wide distribution, 100s of isolates N.A. SEQUENCED WashU WORMBASE Stein et al. 2003 37 wild isolates sequenced 30x (Cutter lab)
japonica c F/M - - - - Elegans Japonica isolates from Japan (Yoshiga/Cutter) DF5080 SEQUENCED WashU WORMBASE - -
remanei d F/M - - - - Elegans Elegans USA/Canada, Europe, Japan, Taiwan, 100s of isolates PB4641, PX356, PX349 SEQUENCED WashU, Phillips WORMBASE Fierst et al. 2015 approx 35 wild isolates sequenced
drosophilae f DF5077 F/M - - - - Drosophilae rotting saguaro cactus in Arizona, a few isolates DF5112 SEQUENCED Blaxter - - -
plicata g SB355 F/M - - - - base - - SEQUENCED Blaxter Caenorhabditis DB - -
monodelphis 1 SB341 F/M J. Raschka Berlin, Germany 2001 W. Sudhaus base A second isolate from Norway (Félix) JU1667 SEQUENCED Blaxter Caenorhabditis DB Slos et al. BMC Zool. 2017 -
sp. 2 2 DF5070 F/M S. Wirth Corsica, France Oct 2001 W. Sudhaus Drosophilae (sister of drosophilae) 1 single isolate - SEQUENCED Blaxter - - -
angaria 3 PS1010 F/M - - 1990 - Angaria 3 isolates from Florida USA - SEQUENCED CalTech WORMBASE Mortazavi et al. -
brenneri 4 F/M - - - - Elegans Elegans tropical, ~30 isolates (Felix, Cutter, Braendle) PB2801, VX223-225, VX227 SEQUENCED WashU WORMBASE - VX strains sequenced but not yet assembled (Cutter lab); RNA seq for 10 isolates http://www.ncbi.nlm.nih.gov/sra/?term=SRP042651+Caenorhabditis
sinica 5 F/M M.-A. Félix Chengyang, Guangxi, China 6 May 2005 M.-A. Félix Elegans Elegans Isolates from China, Vietnam (Cutter, Ailion, Félix) JU800 SEQUENCED Cutter Blaxter WORMBASE - -
portoensis 6 EG4788 F/M M. Ailion, A.-J. Rodrigues Amares, Portugal 28 Mar 2007 M. Ailion Portugal, Spain, France, Ireland (Ailion, Félix, Braendle) EG5626 Sequenced Blaxter - - -
afra 7 JU1199 F/M M. Herrmann Begoro, Ghana Jun 2007 M.-A. Félix Elegans Japonica 2 isolates from West Africa (Félix) JU1286 SEQUENCED Blaxter Caenorhabditis DB - -
sp. 8 8 QX1182 F/M M. Rockman Backyard of 93 Mercer St., Jersey City, NJ, USA 28 Jul 2007 M. Rockman Angaria close to sp. 24 and 56 Isolates from USA (Fitch), Europe (Braendle, Félix), Canada (Rockman) JU3312 SEQUENCED Blaxter - - -
nigoni 9 JU1325 F/M M.-A. Félix Trivandrum Zoo, Kerala, India 21 Dec 2007 M.-A. Félix Elegans Elegans, sister of briggsae Various wet tropical places from Yucatan to Singapore (Ailion, Félix, Inoue) JU1422 SEQUENCED Schwarz OPEN SCIENCE FRAMEWORK - -
doughertyi 10 JU1333 F/M M.-A. Félix Angela Spice Garden, Kerala, India 27 Dec 2007 M.-A. Félix Elegans Elegans 6 isolates from South India JU1771 SEQUENCED Blaxter Caenorhabditis DB - RNA seq for JU1328 & JU1333
tropicalis 11 JU1373 H/M V. Robert, L. Sablé Saint-Benoît, La Réunion Jan 2008 M.-A. Félix Elegans Elegans Common in tropical regions (not so far on the African continent, one in Asia) - SEQUENCED WashU, etc WORMBASE - -
castelli 12 JU1426 F/M P. Châtelet Nouragues Forest, French Guiana May 2008 M.-A. Félix Angaria Several isolates from French Guiana (Félix, Braendle, Cutter) JU1956 SEQUENCED Blaxter Caenorhabditis DB - -
virilis 13 JU1528 F/M M.-A. Félix Orsay apple orchard 9 Sep 2008 M.-A. Félix Drosophilae Several isolates from two locations in France JU1968 SEQUENCED Blaxter Caenorhabditis DB - -
imperialis 14 EG5716 F/M D. Ailion Moorea, French Polynesia 24 Jul 2009 M. Ailion Elegans Japonica also Polynesia, Guadeloupe (Félix, Braendle) EG5942-EG5947 SEQUENCED Blaxter - - -
kamaaina 15 QG122 F/M M. Rockman Near Hanalei Bay, Kauai, Hawaii, USA 2 Aug 2009 M. Rockman Elegans Elegans Kauai and Maui, 2 isolates QG2076, QG2077 SEQUENCED Rockman Caenorhabditis DB -
wallacei 16 JU1873 F/M J.-B. Pénigault Sanda Center, Bali, Indonesia 11 Nov 2009 J.-B. Pénigault Elegans Elegans 2 isolates from Indonesia (Félix) JU1898 in assembly Schwarz -
nouraguensis 17 JU1825 F/M C. Braendle, M.-A. Félix Nouragues Forest, French Guiana 21 Nov 2009 C. Braendle, M.-A. Félix Elegans Japonica Many isolates from French Guiana JU2079 SEQUENCED Blaxter Caenorhabditis DB - additional strains sequenced
macrosperma 18 JU1857 F/M C. Braendle, M.-A. Félix Nouragues Forest, French Guiana 23 Nov 2009 C. Braendle, M.-A. Félix Elegans Japonica A few isolates from Nouragues, French Guiana JU2083 SEQUENCED Cutter Caenorhabditis DB - -
yunquensis 19 EG6142 F/M S. Dalton El Yunque, Puerto Rico 28 Mar 2010 S. Dalton, M. Ailion Elegans Japonica Puerto Rico XZ1517-XZ1520 SEQUENCED Blaxter - - -
guadeloupensis 20 NIC113 F/M C. Braendle Soufrière Forest trail, Guadeloupe Mar 2010 C. Braendle Guadeloupensis Guadeloupe SEQUENCED Blaxter Caenorhabditis DB - resequencing required
parvicauda 21 NIC134 F/M C. Gimond Island of Sainte Marie, Madagascar Dec 2010 C. Braendle base Also Polynesia, Thailand and Caribbean (Félix) NIC534 SEQUENCED Blaxter Caenorhabditis DB Stevens et al. Evol Lett 2019 -
latens 23 VX88 F/M G.-X. Wang Jiufeng Village, Wuhan City, Hubei Province, China 27 Oct 2009 G.-X. Wang Elegans Elegans, sister of C. remanei Several isolates from China (Cutter) PX534, PX573, PX574, PX580 SEQUENCED Phillips Caenorhabditis DB - -
sp. 24 24 QG555 F/M A. Paaby Santa Barbara, USA July 2011 A. Paaby Angaria close to sp. 8 and 56 Isolates from California, Panama, Mexico (Rockman, Félix) SEQUENCED Blaxter - - -
sp. 25 25 ZF1222 F/M A. Seah, T. Inoue Singapore 3 Sep 2011 T. Inoue Elegans Japonica 2 isolates from Singapore ZF1457 SEQUENCED Blaxter - - -
zanzibari 26 JU2161 F/M M.-A. Félix Zanzibar, Tanzania 9 Mar 2012 M.-A. Félix Elegans Elegans 5 isolates from Zanzibar JU2190 SEQUENCED Blaxter Caenorhabditis DB Stevens et al. Evol Lett 2019 -
sp. 27 27 QX2263 F/M - Buenos Aires, Argentina 2 Mar 2012 E. Andersen Portoensis Argentina SEQUENCED Blaxter - - -
panamensis 28 QG702 F/M M. Rockman Barro Colorado Island, Panama 23 Apr 2012 M. Rockman Elegans Japonica several isofemale lines from Panama QG2080, QG2081 SEQUENCED Rockman Caenorhabditis DB Stevens et al. Evol Lett 2019 -
becei 29 QG704 F/M M. Rockman Barro Colorado Island, Panama 25 Apr 2012 M. Rockman Elegans Japonica, sister of nouraguensis many isofemale lines from Panama QG2082, QG2083 SEQUENCED Rockman Caenorhabditis DB Stevens et al. Evol Lett 2019 -
sp. 30 30 DF5152 F/M - Gallon Jug, Belize 15 Nov 2012 K. Kiontke Drosophilae 4 isofemale lines from Belize ongoing (K. Kiontke) SEQUENCED Blaxter - - -
uteleia 31 JU2469 F/M - Madre de Dios, Peru Jan 2013 L. Frézal Guadeloupensis 2 isolates from Peru JU2585 SEQUENCED Blaxter Caenorhabditis DB Stevens et al. Evol Lett 2019 -
sulstoni 32 SB454 F/M - East Africa? Feb 2013 W. Sudhaus Elegans Japonica, sister of afra 1 isolate, from the gut of the millipede Archispirostreptus gigas JU2788 SEQUENCED Blaxter Caenorhabditis DB Stevens et al. Evol Lett 2019 -
sp. 33 33 BRC20065 F/M J. Wang Taiwan 24 May 2012 J. Wang Elegans Elegans 1 isolate from Taiwan BRC20066 IN SEQUENCING Wang Tsai - - -
inopinata 34 NK74SC F/M N. Kanzaki Shigaki Island, Japan May 2013 N. Kanzaki Elegans Elegans, with C. sp. 35 sister of C. elegans 1 isolate from Japan. Associated with fig wasps and Ficus septica - SEQUENCED Kanzaki, Kikuchi Caenorhabditis DB Kanzaki et al. Nat Comm 2019 -
sp. 35 35 DF5171 F/M - Banda Ache, Indonesia Aug 2013 N. Kanzaki Elegans Elegans, with C. sp. 34 sister of C. elegans 2 Isolates from Indonesia, associated with Ficus hispida - IN SEQUENCING Kanzaki, Kikuchi - - -
sp. 36 36 NK02NV F/M N. Kanzaki Tokyo, Japan Apr 2013 N. Kanzaki Elegans Japonica 1 isolate from Japan. Associated with the weevil Niphades variegatus - IN SEQUENCING Kanzaki, Kikuchi - - -
dolens 37 NIC394 F/M C. Braendle, A. Cutter, R. Jovelin, N. Callemeyn Nouragues National Reserve, French Guiana 18 Apr 2013 C. Braendle Angaria group Angaria 1 isolate from French Guiana - SEQUENCED Blaxter - - -
quiockensis 38 JU2745 F/M F. Besnard Guadeloupe (Basse Terre) 09 June 2014 F. Besnard Angaria 1 isolate from Guadeloupe JU2809 SEQUENCED Blaxter Caenorhabditis DB Stevens et al. Evol Lett 2019 -
waitukubuli 39 NIC564 F/M C. Braendle Dominica 13 May 2014 C. Braendle Elegans Japonica 1 isolate from Dominique - SEQUENCED Blaxter Caenorhabditis DB Stevens et al. Evol Lett 2019 -
tribulationis 40 JU2774 F/M J.-B. Pénigault Danbulla, Australia 08 August 2014 L. Frézal Elegans Elegans 5 isolates from Australia, in fresh or rotting figs JU2818 SEQUENCED Blaxter Caenorhabditis DB Stevens et al. Evol Lett 2019 -
sp. 41 41 BRC20276 F/M - Solomon Islands October 2014 J. Wang Elegans Elegans 2 isolates from Solomon Islands - IN SEQUENCING Wang Tsai - - -
astrocarya 42 NIC1040 F/M C. Braendle/A. Cutter Nouragues Forest, French Guiana August 2014 C. Braendle base one isolate from French Guiana - SEQUENCED Blaxter - - -
vivipara 43 NIC1070 F/M C. Gosse Chichén Itzá, Yucatán, Mexico 17 October 2014 C. Braendle Portoensis 2 isolates from Mexico; in orange berries NIC1581 SEQUENCED Blaxter Caenorhabditis DB Stevens et al. Evol Lett 2019 resequencing required
sp. 44 44 BRC20300 F/M J. Wang Shihting mountain near Taipei City, Taiwan Dec 2014 J. Wang Elegans Elegans one isolate from Taiwan; in flowers - IN SEQUENCING Wang Tsai - - -
sp. 45 45 NIC759 F/M C. Braendle Sylvania, Dominica 16 May 2014 C. Braendle Guadeloupensis sister species of C. guadeloupensis one isolate from Dominica; in Cecropia fruit - SEQUENCED Blaxter - - -
sp. 46 46 NIC1120 F/M C. Braendle Macchu Picchu, Aguas Calientes, Peru 7 April 2015 C. Braendle Elegans Japonica one isolate from Peru - SEQUENCED Blaxter - - -
sp. 47 47 NIC1127 F/M C. Braendle Tambopata region, Amazon, Peru 7 April 2015 C. Braendle Angaria one isolate from Peru - SEQUENCED Blaxter - - -
sp. 48 48 BRC20359 F/M J. Wang Khao Yai National park, Thailand 4 May 2015 J. Wang Elegans Elegans one isolate from Thailand - SSEQUENCED Blaxter - - -
sp. 49 49 BRC20376 F/M J. Wang Solomon Islands - J. Wang Elegans Japonica one isolate Solomon Islands - SEQUENCED Blaxter - - -
sp. 50 50 BRC20387 F/M Dai near Taipei City, Taiwan 18 October 2015 J. Wang Elegans Japonica two isolates from Taiwan - Sequencing_planned Blaxter - - -
sp. 51 51 QG2915 F/M M. Rockman Australia 2017 M Rockman Elegans Elegans two isolates from Australia - SEQUENCED Blaxter - - -
sp. 52 52 QG2933 F/M M. Rockman Australia 2017 M Rockman one isolate from Australia - Sequencing_planned Blaxter - - -
sp. 53 53 ECA821 F/M E. Andersen Oahu, Hawaii 2017 T Crombie Elegans Elegans, sister of C. kamaaina several isolates from Oahu and Kauai - SEQUENCED Blaxter - - -
sp. 54 54 BRC20468 F/M Hsueh, Yen-Ping Miaoli County?, Taiwan 18 August 2016 J Wang Elegans Elegans - SEQUENCED Blaxter - - -
sp. 55 55 JU3317 F/M M.-A. Félix Pugao Laozhai, Yuanyang, Yunnan, China 5 March 2018 M.-A. Félix Elegans Elegans one isolate from Yunnan, China - SEQUENCED Blaxter - - -
sp. 56 56 JU2215 F/M M. Joron Tarapoto, Peru October 2012 L. Frézal Angaria close to sp. 8 and 24 one isolate from Peru (JU3313 8x inbred and very sick) SEQUENCED Blaxter - -
sp. 57 57 QG3050 F/M M. Rockman Barro Colorado Island, Panama August 2018 M. Rockman near monodelphis and sonorae? two isolates from Panama QG3077 - - -
sp. 58 58 RS6130 F/M M. Herrmann Bolivia 2019 M. Herrmann close to C. astrocarya JU3779 or JU3880 sent to Blaxter - - -
sp. 59 59 RS6131 F/M M. Herrmann Bolivia 2019 M. Herrmann Elegans Japonica, close to C. becei JU3778 sent to Blaxter - - -
sp. 60 60 QG3550 F/M M. Rockman Costa Rica 2019 M. Rockman Elegans Japonica one isolate in inbreeding - - -
sp. 61 61 JU4045 F/M M.-A. Félix Sapa area, Vietnam 2019 M.-A. Félix Elegans Elegans one isolate JU4110 - - -
sp. 62 62 JU4050 F/M M.-A. Félix Sapa area, Vietnam 2019 M.-A. Félix Elegans Elegans one isolate JU4112 - - -
sp. 63 63 JU4056 F/M M.-A. Félix Sapa area, Vietnam 2019 M.-A. Félix Elegans Elegans, close to sp. 33 one isolate JU4113 - - -
sp. 64 64 JU4061 F/M M.-A. Félix Sapa area, Vietnam 2019 M.-A. Félix Portoensis one isolate JU4117 - - -
sp. 65 65 JU4086 F/M M.-A. Félix Dalat area, Vietnam 2019 M.-A. Félix Elegans Elegans four isolates from Vietnam JU4118 - - -
sp. 66 66 JU4096 F/M M.-A. Félix Dalat area, Vietnam 2019 M.-A. Félix Elegans Elegans, close to sp. 48 and brenneri seven isolates from Vietnam JU4121 - - -


Species numbers are assigned by Karin Kiontke, NYU.

Published phylogeny, up to sp. 21:

Published phylogeny from Kiontke et al. 2011 with species names from Félix, Braendle & Cutter 2014

Updated phylogeny, up to sp. 32:

http://wormtails.bio.nyu.edu/RhabditinaDB_Images/GenusTrees/CaenorhabditisTree.png


2017 phylogeny of a subset of species, based on their genome sequences by Slos et al.

https://bmczool.biomedcentral.com/articles/10.1186/s40850-017-0013-2

See Stevens et al. 2019 [1]

and the latest unpublished phylogeny [2]. Thank you Lewis!