Difference between revisions of "RECOMBINANT INBRED LINE PANELS (or other useful strain panels) here"
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(Created page with "{| class="wikitable" |- ! Lab !! Species !! Strains in panel !! Numver !! Advanced intercross (Y/N) !! Genotyping !! Reference - else: free to distribute? !! Lab strain number...") |
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− | ! Lab !! Species !! Strains in panel !! | + | ! Lab !! Species !! Strains in panel !! Number !! Advanced intercross (Y/N) !! Genotyping !! Reference - else: free to distribute? !! Lab strain numbers !! Notes |
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| Kruglyak|| ''C. elegans'' || N2, CB4856 || 239 || yes || 1460 markers|| Rockman & Kruglyak, PLoS Gen 2009|| QX1-239|| These strains have population structure. Please see the PLoS Genetics paper or contact Matt Rockman for advice on appropriate analysis. | | Kruglyak|| ''C. elegans'' || N2, CB4856 || 239 || yes || 1460 markers|| Rockman & Kruglyak, PLoS Gen 2009|| QX1-239|| These strains have population structure. Please see the PLoS Genetics paper or contact Matt Rockman for advice on appropriate analysis. | ||
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| Kruglyak ||''C. elegans'' || QX1430, CB4856 || 359|| yes || 1460 markers || yes || QX240-QX598 || QX1430: ''peel-1(ttTi12715); qgIR1 [haw102573 to 4,822,488, CB4856 > N2]'' - compatible with CB4856 and ''npr-1'' region derived from CB4856 | | Kruglyak ||''C. elegans'' || QX1430, CB4856 || 359|| yes || 1460 markers || yes || QX240-QX598 || QX1430: ''peel-1(ttTi12715); qgIR1 [haw102573 to 4,822,488, CB4856 > N2]'' - compatible with CB4856 and ''npr-1'' region derived from CB4856 | ||
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− | | | + | | Andersen ||''C. elegans'' || QX1430, CB4856 || 1000|| no || not genotyped yet, will be whole-genome sequence || yes || unassigned || QX1430: ''peel-1(ttTi12715); qgIR1 [haw102573 to 4,822,488, CB4856 > N2]'' - compatible with CB4856 and ''npr-1'' region derived from CB4856 |
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− | | | + | | Kammenga || ''C. elegans'' || N2, CB4856 || 80 || no || 121 markers|| Li et al., PLoS Gen 2006|| WN1-WN80 || |
+ | |- | ||
+ | | Zhang || ''C. elegans'' || N2, CB4856 || 159 || no || variable number || Bharami & Zhang, G3 2013 || ZC428-ZC588 [excluding ZC453, ZC456 and ZC572] and ZC870 || | ||
+ | |- | ||
+ | | Viney || ''C. elegans'' || N2, DR1350 || 180 || no|| 42 markers || Harvey et al., 2008 || || || | ||
+ | |- | ||
+ | | Braendle & Teotonio || ''C. elegans'' || JU751, JU1200 || 144 || no || under way || not yet || NIC600-NIC743 || | ||
+ | |- | ||
+ | | Rockman ||''C. elegans'' || QG5, QX1199|| 82|| no || 157 markers || yes, w/ conditions until publication || QG6-QG104|| QG5: ''him-5(e1490)>AB2''; QX1199: ''him-5(e1490)>CB4856''. These lines are convenient for studying males. | ||
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− | | Félix | + | | Félix || ''C. elegans'' || JU605, JU606 || 60 || no|| 50 markers || Duveau & Félix, PLoS Biol 2012 || JU1109-JU1168 || JU605: ''let-23(sy1)'' in N2 background; JU606: ''let-23(sy1)'' in AB1 background |
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− | | Félix || ''C. | + | | Félix || ''C. elegans'' || MT1789, JU456 || 79 || no|| 50 markers || yes with PCR or NGS or both || JU1672-JU1753|| MT1789: ''sup-17(n316)'' in N2 background; JU456: ''sup-17(n316)'' in CB4856 background |
|- | |- | ||
| Baird|| ''C. briggsae'' || AF16, HK104 || 167|| yes ||1030 markers || Ross et al., PLoS Gen 2011 || PB1101-PB1286 || | | Baird|| ''C. briggsae'' || AF16, HK104 || 167|| yes ||1030 markers || Ross et al., PLoS Gen 2011 || PB1101-PB1286 || | ||
|- | |- | ||
− | | | + | | Félix || ''C. briggsae'' || JU1264, HK104 || 56 || no || under way || yes, w/ conditions until publication || JU2258-JU2317 || |
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− | | | + | | Félix || ''C. briggsae'' || JU516, HK104 || 54|| no || no || yes, w/ conditions until publication || JU2318-JU2376 || |
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− | | | + | | Rothman || ''C. elegans'' || MY16, N2 || 95 || no || 2000 markers || yes, w/ conditions until publication || JR3493-JR3594 |
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− | | | + | | Zhao || ''C. briggsae'' x ''C. nigoni'' || AF16, JU1421 || 110|| N.A. (NILs)|| yes ||Yan et al., PLoS One 2012 || ZZY10010-ZZY10356 (Not continuous in numbering) || at least 15 generation of backcross with ''C.'' sp. 9|| |
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− | | | + | | Cutter || ''C. briggsae'' x ''C. nigoni'' || AF16, JU1422 ||210 || N.A. (NILs) || GBS complete, analysis in progress || not yet || VX1101-VX1499 || 6 generations backcross, representatives from all 4 cross directions |
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Latest revision as of 19:00, 28 June 2016
Lab | Species | Strains in panel | Number | Advanced intercross (Y/N) | Genotyping | Reference - else: free to distribute? | Lab strain numbers | Notes | |
---|---|---|---|---|---|---|---|---|---|
Kruglyak | C. elegans | N2, CB4856 | 239 | yes | 1460 markers | Rockman & Kruglyak, PLoS Gen 2009 | QX1-239 | These strains have population structure. Please see the PLoS Genetics paper or contact Matt Rockman for advice on appropriate analysis. | |
Kruglyak | C. elegans | QX1430, CB4856 | 359 | yes | 1460 markers | yes | QX240-QX598 | QX1430: peel-1(ttTi12715); qgIR1 [haw102573 to 4,822,488, CB4856 > N2] - compatible with CB4856 and npr-1 region derived from CB4856 | |
Andersen | C. elegans | QX1430, CB4856 | 1000 | no | not genotyped yet, will be whole-genome sequence | yes | unassigned | QX1430: peel-1(ttTi12715); qgIR1 [haw102573 to 4,822,488, CB4856 > N2] - compatible with CB4856 and npr-1 region derived from CB4856 | |
Kammenga | C. elegans | N2, CB4856 | 80 | no | 121 markers | Li et al., PLoS Gen 2006 | WN1-WN80 | ||
Zhang | C. elegans | N2, CB4856 | 159 | no | variable number | Bharami & Zhang, G3 2013 | ZC428-ZC588 [excluding ZC453, ZC456 and ZC572] and ZC870 | ||
Viney | C. elegans | N2, DR1350 | 180 | no | 42 markers | Harvey et al., 2008 | |||
Braendle & Teotonio | C. elegans | JU751, JU1200 | 144 | no | under way | not yet | NIC600-NIC743 | ||
Rockman | C. elegans | QG5, QX1199 | 82 | no | 157 markers | yes, w/ conditions until publication | QG6-QG104 | QG5: him-5(e1490)>AB2; QX1199: him-5(e1490)>CB4856. These lines are convenient for studying males. | |
Félix | C. elegans | JU605, JU606 | 60 | no | 50 markers | Duveau & Félix, PLoS Biol 2012 | JU1109-JU1168 | JU605: let-23(sy1) in N2 background; JU606: let-23(sy1) in AB1 background | |
Félix | C. elegans | MT1789, JU456 | 79 | no | 50 markers | yes with PCR or NGS or both | JU1672-JU1753 | MT1789: sup-17(n316) in N2 background; JU456: sup-17(n316) in CB4856 background | |
Baird | C. briggsae | AF16, HK104 | 167 | yes | 1030 markers | Ross et al., PLoS Gen 2011 | PB1101-PB1286 | ||
Félix | C. briggsae | JU1264, HK104 | 56 | no | under way | yes, w/ conditions until publication | JU2258-JU2317 | ||
Félix | C. briggsae | JU516, HK104 | 54 | no | no | yes, w/ conditions until publication | JU2318-JU2376 | ||
Rothman | C. elegans | MY16, N2 | 95 | no | 2000 markers | yes, w/ conditions until publication | JR3493-JR3594 | ||
Zhao | C. briggsae x C. nigoni | AF16, JU1421 | 110 | N.A. (NILs) | yes | Yan et al., PLoS One 2012 | ZZY10010-ZZY10356 (Not continuous in numbering) | at least 15 generation of backcross with C. sp. 9 | |
Cutter | C. briggsae x C. nigoni | AF16, JU1422 | 210 | N.A. (NILs) | GBS complete, analysis in progress | not yet | VX1101-VX1499 | 6 generations backcross, representatives from all 4 cross directions | |