Difference between revisions of "RECOMBINANT INBRED LINE PANELS (or other useful strain panels) here"

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| Kruglyak ||''C. elegans'' || QX1430, CB4856 || 359|| yes || 1460 markers || yes || QX240-QX598 || QX1430: ''peel-1(ttTi12715); qgIR1 [haw102573 to 4,822,488, CB4856 > N2]'' - compatible with CB4856 and ''npr-1'' region derived from CB4856
 
| Kruglyak ||''C. elegans'' || QX1430, CB4856 || 359|| yes || 1460 markers || yes || QX240-QX598 || QX1430: ''peel-1(ttTi12715); qgIR1 [haw102573 to 4,822,488, CB4856 > N2]'' - compatible with CB4856 and ''npr-1'' region derived from CB4856
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| Andersen ||''C. elegans'' || QX1430, CB4856 || 1000|| no || not genotyped yet, will be whole-genome sequence || yes || unassigned || QX1430: ''peel-1(ttTi12715); qgIR1 [haw102573 to 4,822,488, CB4856 > N2]'' - compatible with CB4856 and ''npr-1'' region derived from CB4856
 
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| Kammenga || ''C. elegans'' || N2, CB4856 || 80 || no || 121 markers|| Li et al., PLoS Gen 2006|| WN1-WN80 ||  
 
| Kammenga || ''C. elegans'' || N2, CB4856 || 80 || no || 121 markers|| Li et al., PLoS Gen 2006|| WN1-WN80 ||  
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| Félix || ''C. elegans'' || JU605, JU606 || 60 || no|| 50 markers || Duveau & Félix, PLoS Biol 2012 || JU1109-JU1168 || JU605: ''let-23(sy1)'' in N2 background; JU606: ''let-23(sy1)'' in AB1 background
 
| Félix || ''C. elegans'' || JU605, JU606 || 60 || no|| 50 markers || Duveau & Félix, PLoS Biol 2012 || JU1109-JU1168 || JU605: ''let-23(sy1)'' in N2 background; JU606: ''let-23(sy1)'' in AB1 background
 
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| Félix || ''C. elegans'' || MT1789, JU456 || 79 || no|| 50 markers || yes || JU1672-JU1753|| MT1789: ''sup-17(n316)'' in N2 background; JU456: ''sup-17(n316)'' in CB4856 background
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| Félix || ''C. elegans'' || MT1789, JU456 || 79 || no|| 50 markers || yes with PCR or NGS or both || JU1672-JU1753|| MT1789: ''sup-17(n316)'' in N2 background; JU456: ''sup-17(n316)'' in CB4856 background
 
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| Baird|| ''C. briggsae'' || AF16, HK104 || 167|| yes ||1030 markers || Ross et al., PLoS Gen 2011 || PB1101-PB1286 ||  
 
| Baird|| ''C. briggsae'' || AF16, HK104 || 167|| yes ||1030 markers || Ross et al., PLoS Gen 2011 || PB1101-PB1286 ||  
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| Félix || ''C. briggsae'' || JU516, HK104 || 54|| no || no || yes, w/ conditions until publication || JU2318-JU2376 ||
 
| Félix || ''C. briggsae'' || JU516, HK104 || 54|| no || no || yes, w/ conditions until publication || JU2318-JU2376 ||
 
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| Zhao || ''C. briggsae'' x ''C.'' sp. 9 || AF16, JU1421 || 12?|| N.A. (NILs)|| yes ||Yan et al., PLoS One 2012 || ZZY?-ZZY? ||  
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| Rothman || ''C. elegans'' || MY16, N2 || 95 || no || 2000 markers || yes, w/ conditions until publication || JR3493-JR3594
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| Zhao || ''C. briggsae'' x ''C. nigoni''  || AF16, JU1421 || 110|| N.A. (NILs)|| yes ||Yan et al., PLoS One 2012 || ZZY10010-ZZY10356 (Not continuous in numbering) || at least 15 generation of backcross with ''C.'' sp. 9||
 
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| Cutter ||  ''C. briggsae'' x ''C.'' sp. 9 || AF16, JU1422 ||210 || N.A. (NILs) || under say (GBS) || not yet  || VX1101-VX1499 || 6 generations backcross, representatives from all 4 cross directions
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| Cutter ||  ''C. briggsae'' x ''C. nigoni'' || AF16, JU1422 ||210 || N.A. (NILs) || GBS complete, analysis in progress || not yet  || VX1101-VX1499 || 6 generations backcross, representatives from all 4 cross directions
 
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Latest revision as of 19:00, 28 June 2016

Lab Species Strains in panel Number Advanced intercross (Y/N) Genotyping Reference - else: free to distribute? Lab strain numbers Notes
Kruglyak C. elegans N2, CB4856 239 yes 1460 markers Rockman & Kruglyak, PLoS Gen 2009 QX1-239 These strains have population structure. Please see the PLoS Genetics paper or contact Matt Rockman for advice on appropriate analysis.
Kruglyak C. elegans QX1430, CB4856 359 yes 1460 markers yes QX240-QX598 QX1430: peel-1(ttTi12715); qgIR1 [haw102573 to 4,822,488, CB4856 > N2] - compatible with CB4856 and npr-1 region derived from CB4856
Andersen C. elegans QX1430, CB4856 1000 no not genotyped yet, will be whole-genome sequence yes unassigned QX1430: peel-1(ttTi12715); qgIR1 [haw102573 to 4,822,488, CB4856 > N2] - compatible with CB4856 and npr-1 region derived from CB4856
Kammenga C. elegans N2, CB4856 80 no 121 markers Li et al., PLoS Gen 2006 WN1-WN80
Zhang C. elegans N2, CB4856 159 no variable number Bharami & Zhang, G3 2013 ZC428-ZC588 [excluding ZC453, ZC456 and ZC572] and ZC870
Viney C. elegans N2, DR1350 180 no 42 markers Harvey et al., 2008
Braendle & Teotonio C. elegans JU751, JU1200 144 no under way not yet NIC600-NIC743
Rockman C. elegans QG5, QX1199 82 no 157 markers yes, w/ conditions until publication QG6-QG104 QG5: him-5(e1490)>AB2; QX1199: him-5(e1490)>CB4856. These lines are convenient for studying males.
Félix C. elegans JU605, JU606 60 no 50 markers Duveau & Félix, PLoS Biol 2012 JU1109-JU1168 JU605: let-23(sy1) in N2 background; JU606: let-23(sy1) in AB1 background
Félix C. elegans MT1789, JU456 79 no 50 markers yes with PCR or NGS or both JU1672-JU1753 MT1789: sup-17(n316) in N2 background; JU456: sup-17(n316) in CB4856 background
Baird C. briggsae AF16, HK104 167 yes 1030 markers Ross et al., PLoS Gen 2011 PB1101-PB1286
Félix C. briggsae JU1264, HK104 56 no under way yes, w/ conditions until publication JU2258-JU2317
Félix C. briggsae JU516, HK104 54 no no yes, w/ conditions until publication JU2318-JU2376
Rothman C. elegans MY16, N2 95 no 2000 markers yes, w/ conditions until publication JR3493-JR3594
Zhao C. briggsae x C. nigoni AF16, JU1421 110 N.A. (NILs) yes Yan et al., PLoS One 2012 ZZY10010-ZZY10356 (Not continuous in numbering) at least 15 generation of backcross with C. sp. 9
Cutter C. briggsae x C. nigoni AF16, JU1422 210 N.A. (NILs) GBS complete, analysis in progress not yet VX1101-VX1499 6 generations backcross, representatives from all 4 cross directions