RECOMBINANT INBRED LINE PANELS (or other useful strain panels) here
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| Lab | Species | Strains in panel | Number | Advanced intercross (Y/N) | Genotyping | Reference - else: free to distribute? | Lab strain numbers | Notes | |
|---|---|---|---|---|---|---|---|---|---|
| Kruglyak | C. elegans | N2, CB4856 | 239 | yes | 1460 markers | Rockman & Kruglyak, PLoS Gen 2009 | QX1-239 | These strains have population structure. Please see the PLoS Genetics paper or contact Matt Rockman for advice on appropriate analysis. | |
| Kruglyak | C. elegans | QX1430, CB4856 | 359 | yes | 1460 markers | yes | QX240-QX598 | QX1430: peel-1(ttTi12715); qgIR1 [haw102573 to 4,822,488, CB4856 > N2] - compatible with CB4856 and npr-1 region derived from CB4856 | |
| Andersen | C. elegans | QX1430, CB4856 | 1000 | no | not genotyped yet, will be whole-genome sequence | yes | unassigned | QX1430: peel-1(ttTi12715); qgIR1 [haw102573 to 4,822,488, CB4856 > N2] - compatible with CB4856 and npr-1 region derived from CB4856 | |
| Kammenga | C. elegans | N2, CB4856 | 80 | no | 121 markers | Li et al., PLoS Gen 2006 | WN1-WN80 | ||
| Zhang | C. elegans | N2, CB4856 | 159 | no | variable number | Bharami & Zhang, G3 2013 | ZC428-ZC588 [excluding ZC453, ZC456 and ZC572] and ZC870 | ||
| Viney | C. elegans | N2, DR1350 | 180 | no | 42 markers | Harvey et al., 2008 | |||
| Braendle & Teotonio | C. elegans | JU751, JU1200 | 144 | no | under way | not yet | NIC600-NIC743 | ||
| Rockman | C. elegans | QG5, QX1199 | 82 | no | 157 markers | yes, w/ conditions until publication | QG6-QG104 | QG5: him-5(e1490)>AB2; QX1199: him-5(e1490)>CB4856. These lines are convenient for studying males. | |
| Félix | C. elegans | JU605, JU606 | 60 | no | 50 markers | Duveau & Félix, PLoS Biol 2012 | JU1109-JU1168 | JU605: let-23(sy1) in N2 background; JU606: let-23(sy1) in AB1 background | |
| Félix | C. elegans | MT1789, JU456 | 79 | no | 50 markers | yes with PCR or NGS or both | JU1672-JU1753 | MT1789: sup-17(n316) in N2 background; JU456: sup-17(n316) in CB4856 background | |
| Baird | C. briggsae | AF16, HK104 | 167 | yes | 1030 markers | Ross et al., PLoS Gen 2011 | PB1101-PB1286 | ||
| Félix | C. briggsae | JU1264, HK104 | 56 | no | under way | yes, w/ conditions until publication | JU2258-JU2317 | ||
| Félix | C. briggsae | JU516, HK104 | 54 | no | no | yes, w/ conditions until publication | JU2318-JU2376 | ||
| Rothman | C. elegans | MY16, N2 | 95 | no | 2000 markers | yes, w/ conditions until publication | JR3493-JR3594 | ||
| Zhao | C. briggsae x C. nigoni | AF16, JU1421 | 110 | N.A. (NILs) | yes | Yan et al., PLoS One 2012 | ZZY10010-ZZY10356 (Not continuous in numbering) | at least 15 generation of backcross with C. sp. 9 | |
| Cutter | C. briggsae x C. nigoni | AF16, JU1422 | 210 | N.A. (NILs) | GBS complete, analysis in progress | not yet | VX1101-VX1499 | 6 generations backcross, representatives from all 4 cross directions | |
