Difference between revisions of "LIST OF AVAILABLE CAENORHABDITIS SPECIES and the state of their genome projects"
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+ | See [https://wormtails.bio.nyu.edu/fmi/webd/RhabditinaDB?homeurl=http://wormtails.bio.nyu.edu/Databases.html RhabditinaDB] for a comprehensive morphological and taxonomic database of Rhabditina, including ''Caenorhabditis'' | ||
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{| class="wikitable" | {| class="wikitable" | ||
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− | ! Species !! Reference strain !! | + | ! Species !! number !! Reference strain !! Repro- duction !! Collector !! Location !! Date !! Isolated by !! Supergroup (annotation incomplete) !! Group (annotation incomplete) !! Geographic distribution and available isolates (lab) !! Inbred strain !! Genome !! Data ([http://wormbase.org WORMBASE] or other) !! Publications (incomplete) !! Other strains sequenced & other sequence data |
+ | |- | ||
+ | | elegans || a || N2 || H/M || - || - || - || - || Elegans || Elegans || world-wide (mostly temperate) distribution, 100s of isolates || N.A. || SEQUENCED Sanger WashU || [http://wormbase.org WORMBASE] || C. elegans Sequencing Consortium 1998 Science || >400 wild isolates sequenced, see [https://www.elegansvariation.org/ CeNDR] | ||
+ | |- | ||
+ | | briggsae || b || AF16 || H/M || - || - || - || - || Elegans || Elegans || world-wide distribution, 100s of isolates || N.A. || SEQUENCED WashU || [http://wormbase.org WORMBASE] || [https://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.0000045 Stein et al. 2003] || 37 wild isolates sequenced 30x (Cutter lab) ; All wild isolates sequenced, forthcoming in CaeNDR | ||
+ | |- | ||
+ | | japonica || c || || F/M || - || - || - || - || Elegans || Japonica || isolates from Japan (Yoshiga/Cutter) || DF5080 || SEQUENCED WashU || [http://wormbase.org WORMBASE] || - || - | ||
+ | |- | ||
+ | | remanei || d || || F/M || - || - || - || - || Elegans || Elegans || USA/Canada, Europe, Japan, Taiwan, 100s of isolates || PB4641, PX356, PX349 || SEQUENCED WashU, Phillips || [http://wormbase.org WORMBASE] || [https://doi.org/10.1371/journal.pgen.1005323 Fierst et al. 2015] || approx 35 wild isolates sequenced | ||
+ | |- | ||
+ | | drosophilae || f || DF5077 || F/M || - || - || - || - || Drosophilae || || rotting saguaro cactus in Arizona, a few isolates || DF5112 || SEQUENCED Blaxter || - || - || - | ||
+ | |- | ||
+ | | plicata || g || SB355 || F/M || - || - || - || - || base || || - || - || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || - | ||
+ | |- | ||
+ | | auriculariae || || NKZ352 || F/M || - || - || - || - || Auriculariae || sister to monodelphis || Platydema beetles in Japan; one strain at CGC || - || SEQUENCED Kikuchi || [https://www.nature.com/articles/s41598-021-85967-z Dayi et al. 2021] || - || - | ||
+ | |- | ||
+ | |||
+ | | monodelphis || 1 || SB341 || F/M || J. Raschka || Berlin, Germany || 2001 || W. Sudhaus || Auriculariae || || A second isolate from Norway (Félix) || JU1667 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://bmczool.biomedcentral.com/articles/10.1186/s40850-017-0013-2 Slos et al. BMC Zool. 2017] || - | ||
+ | |- | ||
+ | | sp. 2 || 2 || DF5070 || F/M || S. Wirth || Corsica, France || Oct 2001 || W. Sudhaus || Drosophilae || (sister of drosophilae) || 1 single isolate || - || SEQUENCED Blaxter || - || - || - | ||
+ | |- | ||
+ | | angaria || 3 || PS1010 || F/M || - || - || 1990 || - || Angaria || || 3 isolates from Florida USA || - || SEQUENCED CalTech || [http://wormbase.org WORMBASE] || [https://doi.org/10.1101/gr.111021.110 Mortazavi et al.] || - | ||
+ | |- | ||
+ | | brenneri || 4 || || F/M || - || - || - || - || Elegans || Elegans || tropical, ~30 isolates (Felix, Cutter, Braendle) || PB2801, VX223-225, VX227 || SEQUENCED WashU || [http://wormbase.org WORMBASE] || - || VX strains sequenced but not yet assembled (Cutter lab); RNA seq for 10 isolates http://www.ncbi.nlm.nih.gov/sra/?term=SRP042651+Caenorhabditis | ||
+ | |- | ||
+ | | sinica || 5 || || F/M || M.-A. Félix || Chengyang, Guangxi, China || 6 May 2005 || M.-A. Félix || Elegans || Elegans || Isolates from China, Vietnam (Cutter, Ailion, Félix) || JU800 || SEQUENCED Cutter Blaxter || [http://wormbase.org WORMBASE] || - || - | ||
+ | |- | ||
+ | | portoensis || 6 || EG4788 || F/M || M. Ailion, A.-J. Rodrigues || Amares, Portugal || 28 Mar 2007 || M. Ailion || || || Portugal, Spain, France, Ireland (Ailion, Félix, Braendle) || EG5626 || Sequenced Blaxter || - || - || - | ||
|- | |- | ||
− | | | + | | afra || 7 || JU1199 || F/M || M. Herrmann || Begoro, Ghana || Jun 2007 || M.-A. Félix || Elegans || Japonica || 2 isolates from West Africa (Félix) || JU1286 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || - |
|- | |- | ||
− | | | + | | sp. 8 || 8 || QX1182 || F/M || M. Rockman || Backyard of 93 Mercer St., Jersey City, NJ, USA || 28 Jul 2007 || M. Rockman || Angaria || close to sp. 24 and 56|| Isolates from USA (Fitch), Europe (Braendle, Félix), Canada (Rockman) || JU3312 || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | nigoni || 9 || JU1325 || F/M || M.-A. Félix || Trivandrum Zoo, Kerala, India || 21 Dec 2007 || M.-A. Félix || Elegans || Elegans, sister of briggsae || Various wet tropical places from Yucatan to Singapore (Ailion, Félix, Inoue) || JU1422 || SEQUENCED Schwarz || [https://doi.org/10.17605/osf.io/dkbwt OPEN SCIENCE FRAMEWORK] || - || - |
|- | |- | ||
− | | | + | | doughertyi || 10 || JU1333 || F/M || M.-A. Félix || Angela Spice Garden, Kerala, India || 27 Dec 2007 || M.-A. Félix || Elegans || Elegans|| 6 isolates from South India || JU1771 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || RNA seq for JU1328 & JU1333 |
− | |||
− | | | ||
|- | |- | ||
− | | | + | | tropicalis || 11 || JU1373 || H/M || V. Robert, L. Sablé || Saint-Benoît, La Réunion || Jan 2008 || M.-A. Félix || Elegans || Elegans|| Common in tropical regions (not so far on the African continent, one in Asia) || - || SEQUENCED WashU, etc || [http://wormbase.org WORMBASE] || - || All wild isolates sequenced, forthcoming in CaeNDR |
|- | |- | ||
− | | | + | | castelli || 12 || JU1426 || F/M || P. Châtelet || Nouragues Forest, French Guiana || May 2008 || M.-A. Félix || Angaria || || Several isolates from French Guiana (Félix, Braendle, Cutter) || JU1956 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || - |
|- | |- | ||
− | | | + | | virilis || 13 || JU1528 || F/M || M.-A. Félix || Orsay apple orchard || 9 Sep 2008 || M.-A. Félix || Drosophilae || || Several isolates from two locations in France || JU1968 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || - |
|- | |- | ||
− | | | + | | imperialis || 14 || EG5716 || F/M || D. Ailion || Moorea, French Polynesia || 24 Jul 2009 || M. Ailion || Elegans || Japonica || also Polynesia, Guadeloupe (Félix, Braendle) || EG5942-EG5947 || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | kamaaina || 15 || QG122 || F/M || M. Rockman || Near Hanalei Bay, Kauai, Hawaii, USA || 2 Aug 2009 || M. Rockman || Elegans || Elegans || Kauai and Maui, 2 isolates || QG2076, QG2077 || SEQUENCED Rockman || [http://caenorhabditis.org Caenorhabditis DB] || - || |
|- | |- | ||
− | | | + | | wallacei || 16 || JU1873 || F/M || J.-B. Pénigault || Sanda Center, Bali, Indonesia || 11 Nov 2009 || J.-B. Pénigault || Elegans || Elegans || 2 isolates from Indonesia (Félix) || JU1898 || in assembly Schwarz || || - || |
|- | |- | ||
− | | | + | | nouraguensis || 17 || JU1825 || F/M || C. Braendle, M.-A. Félix || Nouragues Forest, French Guiana || 21 Nov 2009 || C. Braendle, M.-A. Félix || Elegans || Japonica || Many isolates from French Guiana || JU2079 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || additional strains sequenced |
|- | |- | ||
− | | | + | | macrosperma || 18 || JU1857 || F/M || C. Braendle, M.-A. Félix || Nouragues Forest, French Guiana || 23 Nov 2009 || C. Braendle, M.-A. Félix || Elegans || Japonica || A few isolates from Nouragues, French Guiana || JU2083 || SEQUENCED Cutter || [http://caenorhabditis.org Caenorhabditis DB] || - || - |
|- | |- | ||
− | | | + | | yunquensis || 19 || EG6142 || F/M || S. Dalton || El Yunque, Puerto Rico || 28 Mar 2010 || S. Dalton, M. Ailion || Elegans || Japonica || Puerto Rico || XZ1517-XZ1520 || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | guadeloupensis || 20 || NIC113 || F/M || C. Braendle || Soufrière Forest trail, Guadeloupe || Mar 2010 || C. Braendle || Guadeloupensis || || Guadeloupe || || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || - || resequencing required |
|- | |- | ||
− | | | + | | parvicauda || 21 || NIC134 || F/M || C. Gimond || Island of Sainte Marie, Madagascar || Dec 2010 || C. Braendle || base || || Also Polynesia, Thailand and Caribbean (Félix) || NIC534 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || - |
|- | |- | ||
− | | | + | | latens || 23 || VX88 || F/M || G.-X. Wang || Jiufeng Village, Wuhan City, Hubei Province, China || 27 Oct 2009 || G.-X. Wang || Elegans || Elegans, sister of C. remanei || Several isolates from China (Cutter) || PX534, PX573, PX574, PX580 || SEQUENCED Phillips || [http://caenorhabditis.org Caenorhabditis DB] || - || - |
|- | |- | ||
− | | | + | | agridulce || 24 || QG555 || F/M || A. Paaby || Santa Barbara, USA || July 2011 || A. Paaby || Angaria || close to sp. 8 and 56|| Isolates from California, Panama, Mexico (Rockman, Félix) || || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | sp. 25 || 25 || ZF1222 || F/M || A. Seah, T. Inoue || Singapore || 3 Sep 2011 || T. Inoue || Elegans || Japonica || 2 isolates from Singapore || ZF1457 || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
+ | | zanzibari || 26 || JU2161 || F/M || M.-A. Félix || Zanzibar, Tanzania || 9 Mar 2012 || M.-A. Félix || Elegans || Elegans || 5 isolates from Zanzibar || JU2190 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || - | ||
|- | |- | ||
− | | | + | | sp. 27 || 27 || QX2263 || F/M || - || Buenos Aires, Argentina || 2 Mar 2012 || E. Andersen || || Portoensis || Argentina || || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | panamensis || 28 || QG702 || F/M || M. Rockman || Barro Colorado Island, Panama || 23 Apr 2012 || M. Rockman || Elegans|| Japonica || several isofemale lines from Panama || QG2080, QG2081 || SEQUENCED Rockman || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || - |
|- | |- | ||
− | | | + | | becei || 29 || QG704 || F/M || M. Rockman || Barro Colorado Island, Panama || 25 Apr 2012 || M. Rockman || Elegans || Japonica, sister of nouraguensis || many isofemale lines from Panama || QG2082, QG2083 || SEQUENCED Rockman || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || >400 RIAILs, Rockman lab |
|- | |- | ||
− | | | + | | sp. 30 || 30 || DF5152 || F/M || - || Gallon Jug, Belize || 15 Nov 2012 || K. Kiontke || Drosophilae || || 4 isofemale lines from Belize || ongoing (K. Kiontke) || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | uteleia || 31 || JU2469 || F/M || - || Madre de Dios, Peru || Jan 2013 || L. Frézal || Guadeloupensis || || 2 isolates from Peru || JU2585 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || - |
|- | |- | ||
− | | | + | | sulstoni || 32 || SB454 || F/M || - || East Africa? || Feb 2013 || W. Sudhaus || Elegans || Japonica, sister of afra || 1 isolate, from the gut of the millipede Archispirostreptus gigas || JU2788 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || - |
|- | |- | ||
− | | | + | | sp. 33 || 33 || BRC20065 || F/M || J. Wang || Taiwan || 24 May 2012 || J. Wang || Elegans || Elegans || 1 isolate from Taiwan || BRC20066 || IN SEQUENCING Wang Tsai || - || - || - |
|- | |- | ||
− | | | + | | inopinata || 34 || NK74SC || F/M || N. Kanzaki || Shigaki Island, Japan || May 2013 || N. Kanzaki || Elegans || Elegans, with C. sp. 35 sister of C. elegans || 1 isolate from Japan. Associated with fig wasps and Ficus septica || - || SEQUENCED Kanzaki, Kikuchi || [http://caenorhabditis.org Caenorhabditis DB] || [https://www.nature.com/articles/s41467-018-05712-5 Kanzaki et al. Nat Comm 2019] || - |
|- | |- | ||
− | | | + | | sp. 35 || 35 || DF5171 || F/M || - || Banda Ache, Indonesia || Aug 2013 || N. Kanzaki || Elegans || Elegans, with C. sp. 34 sister of C. elegans || 2 Isolates from Indonesia, associated with Ficus hispida || - || IN SEQUENCING Kanzaki, Kikuchi || - || - || - |
|- | |- | ||
− | | | + | | niphades || 36 || NK02NV || F/M || N. Kanzaki || Tokyo, Japan || Apr 2013 || N. Kanzaki || Elegans || Japonica || 1 isolate from Japan. Associated with the weevil Niphades variegatus || - || SEQUENCED Kanzaki, Kikuchi || - || [https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-022-09011-8 Sun et al. BMC Genomics 2022] || - |
|- | |- | ||
− | | | + | | dolens || 37 || NIC394 || F/M || C. Braendle, A. Cutter, R. Jovelin, N. Callemeyn || Nouragues National Reserve, French Guiana || 18 Apr 2013 || C. Braendle || Angaria group || Angaria || 1 isolate from French Guiana || - || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | quiockensis || 38 || JU2745 || F/M || F. Besnard || Guadeloupe (Basse Terre) || 09 June 2014 || F. Besnard || Angaria|| || 1 isolate from Guadeloupe || JU2809 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || - |
|- | |- | ||
− | | | + | | waitukubuli || 39 || NIC564 || F/M || C. Braendle || Dominica || 13 May 2014 || C. Braendle || Elegans || Japonica || 1 isolate from Dominique || - || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || - |
|- | |- | ||
− | | | + | | tribulationis || 40 || JU2774 || F/M || J.-B. Pénigault || Danbulla, Australia || 08 August 2014 || L. Frézal || Elegans|| Elegans || 5 isolates from Australia, in fresh or rotting figs || JU2818 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || - |
|- | |- | ||
− | | | + | | sp. 41 || 41 || BRC20276 || F/M || - || Solomon Islands || October 2014 || J. Wang || Elegans || Elegans || 2 isolates from Solomon Islands || - || IN SEQUENCING Wang Tsai || - || - || - |
|- | |- | ||
− | | | + | | astrocarya || 42 || NIC1040 || F/M || C. Braendle/A. Cutter || Nouragues Forest, French Guiana || August 2014 || C. Braendle || base || || one isolate from French Guiana || - || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | || | + | | vivipara || 43 || NIC1070 || F/M || C. Gosse || Chichén Itzá, Yucatán, Mexico || 17 October 2014 || C. Braendle || || Portoensis || 2 isolates from Mexico; in orange berries || NIC1581, NIC2055 || SEQUENCED Blaxter || [http://caenorhabditis.org Caenorhabditis DB] || [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110 Stevens et al. Evol Lett 2019] || resequenced (PACBIO) Braendle |
|- | |- | ||
− | | | + | | sp. 44 || 44 || BRC20300 || F/M || J. Wang || Shihting mountain near Taipei City, Taiwan || Dec 2014 || J. Wang || Elegans || Elegans || one isolate from Taiwan; in flowers || - || IN SEQUENCING Wang Tsai || - || - || - |
|- | |- | ||
− | | | + | | sp. 45 || 45 || NIC759 || F/M || C. Braendle || Sylvania, Dominica || 16 May 2014 || C. Braendle || Guadeloupensis || sister species of C. guadeloupensis || one isolate from Dominica; in Cecropia fruit || - || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | sp. 46 || 46 || NIC1120 || F/M || C. Braendle || Macchu Picchu, Aguas Calientes, Peru || 7 April 2015 || C. Braendle || Elegans|| Japonica || one isolate from Peru || - || SEQUENCED Blaxter|| - || - || - |
|- | |- | ||
− | | | + | | sp. 47 || 47 || NIC1127 || F/M || C. Braendle || Tambopata region, Amazon, Peru || 7 April 2015 || C. Braendle || Angaria || || one isolate from Peru || - || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | sp. 48 || 48 || BRC20359 || F/M || J. Wang || Khao Yai National park, Thailand || 4 May 2015 || J. Wang || Elegans || Elegans || one isolate from Thailand || - || SSEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | sp. 49 || 49 || BRC20376 || F/M || J. Wang || Solomon Islands || - || J. Wang || Elegans || Japonica || one isolate Solomon Islands || - || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | sp. 50 || 50 || BRC20387 || F/M || Dai || near Taipei City, Taiwan || 18 October 2015 ||J. Wang || Elegans || Japonica || two isolates from Taiwan || - || Sequencing_planned Blaxter || - || - || - |
|- | |- | ||
− | | | + | | sp. 51 || 51 || QG2915 || F/M || M. Rockman || Australia || 2017 || M Rockman || Elegans || Elegans || two isolates from Australia || QG2939 || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | sp. 52 || 52 || QG2933 || F/M || M. Rockman || Australia || 2017 || M Rockman || || || one isolate from Australia || QG2935 || Sequencing_planned Blaxter || - || - || - |
|- | |- | ||
− | | | + | | oiwi || 53 || ECA821 || F/M || E. Andersen || Oahu, Hawaii || 2017 || T Crombie || Elegans || Elegans, sister of C. kamaaina || several isolates from Oahu and Kauai || - || SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | sp. 54 || 54 || BRC20468 || F/M || Hsueh, Yen-Ping || Miaoli County?, Taiwan || 18 August 2016 || J Wang || Elegans || Elegans || || - || SEQUENCED Blaxter|| - || - || - |
|- | |- | ||
− | | | + | | sp. 55 || 55 || JU3317 || F/M || M.-A. Félix || Pugao Laozhai, Yuanyang, Yunnan, China || 5 March 2018 || M.-A. Félix || Elegans || Elegans || one isolate from Yunnan, China || JU3404 ||SEQUENCED Blaxter || - || - || - |
|- | |- | ||
− | | | + | | sp. 56 || 56 || JU2215 || F/M || M. Joron || Tarapoto, Peru || October 2012 || L. Frézal || Angaria || close to sp. 8 and 24|| one isolate from Peru || (JU3313 8x inbred and very sick) || SEQUENCED Blaxter || - || - || |
+ | |- | ||
+ | | krikudae || 57 || QG3050 || F/M || M. Rockman || Barro Colorado Island, Panama || August 2018 || M. Rockman || Auriculariae || sister to monodelphis + auricularia || two isolates from Panama || QG3077 || || - || - || - | ||
|- | |- | ||
− | | | + | | sp. 58 || 58 || RS6130 || F/M || M. Herrmann || Bolivia || 2019 || M. Herrmann || || close to C. astrocarya || || JU3779 or JU3880 || sent to Blaxter || - || - || - |
+ | |- | ||
+ | | sp. 59 || 59 || RS6131 || F/M || M. Herrmann || Bolivia || 2019 || M. Herrmann || Elegans || Japonica, close to C. becei || || JU3778 || sent to Blaxter || - || - || - | ||
+ | |- | ||
+ | | sp. 60 || 60 || QG3550 || F/M || M. Rockman || Costa Rica || 2019 || M. Rockman || Elegans || Japonica || one isolate || QG4242 || SEQUENCED Rockman || - || - || - | ||
+ | |- | ||
+ | | sp. 61 || 61 || JU4045 || F/M || M.-A. Félix || Sapa area, Vietnam || 2019 || M.-A. Félix || Elegans || Elegans || one isolate || JU4110 || || - || - || - | ||
+ | |- | ||
+ | | sp. 62 || 62 || JU4050 || F/M || M.-A. Félix || Sapa area, Vietnam || 2019 || M.-A. Félix || Elegans || Elegans || one isolate || JU4112 || || - || - || - | ||
+ | |- | ||
+ | | sp. 63 || 63 || JU4056 || F/M || M.-A. Félix || Sapa area, Vietnam || 2019 || M.-A. Félix || Elegans || Elegans, close to sp. 33 || one isolate || JU4113 || || - || - || - | ||
+ | |- | ||
+ | | sp. 64 || 64 || JU4061 || F/M || M.-A. Félix || Sapa area, Vietnam || 2019 || M.-A. Félix || || Portoensis || one isolate || JU4117 || SEQUENCED Braendle || - || - || - | ||
+ | |- | ||
+ | | sp. 65 || 65 || JU4086 || F/M || M.-A. Félix || Dalat area, Vietnam || 2019 || M.-A. Félix || Elegans || Elegans || four isolates from Vietnam || JU4118 || || - || - || - | ||
+ | |- | ||
+ | | sp. 66 || 66 || JU4096 || F/M || M.-A. Félix || Dalat area, Vietnam || 2019 || M.-A. Félix || Elegans || Elegans, close to sp. 48 and brenneri || seven isolates from Vietnam || JU4121 || || - || - || - | ||
+ | |- | ||
+ | | sp. 67 || 67 || QG4215 || F/M || M. Rockman, E. Andersen || Paluma Range, Australia || 2020 || M. Rockman || Elegans || Japonica, near sp. 49 and 50 || one isolate || QG4243 || || - || - || - | ||
+ | |- | ||
+ | | sp. 68 || 68 ||NIC2161 || F/M || C. Braendle, A. Cutter || Nouragues Natural Reserve, French Guiana || 2014 || C. Braendle || Drosophilae || near sp. 30 || one isolate || ongoing || || - || - || - | ||
+ | |- | ||
+ | | sp. 69 || 69 ||NIC2374 || F/M || C. Braendle || Nouragues Natural Reserve, French Guiana || 2021 || C. Braendle || Angaria || near dolens || one isolate || ongoing || || - || - || - | ||
+ | |- | ||
+ | | sp. 70|| 70 ||TT3412 || F/M || S. Nagarajan, T. Pathak, K. Puraje, M.-A. Félix|| Neral, Marahashtra, India || 2022 || T. Pathak, M.-A. Félix, S. Koushika|| || closest to parvicauda || one isolate || JU4419-21 || || - || - || - | ||
+ | |- | ||
+ | | sp. 71|| 71 ||BRC20593 || F/M || J. Wang|| Vietnam || 2023 || J. Wang|| || || 2 isolates || || || - || - || - | ||
+ | |- | ||
+ | | sp. 72|| 72 ||QG4708 || F/M || T. Nguyen, M. Rockman, S. Tintori, H. Yomai|| Pohnpei, Federated States of Micronesia || 2024 || T. Nguyen, M. Rockman, S. Tintori, H. Yomai|| || || 12 isolates || || || - || - || - | ||
+ | |- | ||
+ | | sp. 73|| 73 ||QG4797 || F/M || T. Nguyen, M. Rockman, S. Tintori, H. Yomai|| Pohnpei, Federated States of Micronesia || 2024 || T. Nguyen, M. Rockman, S. Tintori, H. Yomai|| Japonica || near imperialis || 11 isolates || || || - || - || - | ||
+ | |- | ||
+ | | sp. 74|| 74 ||QG4644 || F/M || T. Nguyen, M. Rockman, S. Tintori, H. Yomai|| Pohnpei, Federated States of Micronesia || 2024 || T. Nguyen, M. Rockman, S. Tintori, H. Yomai|| Japonica || near imperialis || 22 isolates || || || - || - || - | ||
+ | |- | ||
+ | | sp. 75|| 75 ||QG4848 || F/M || T. Nguyen, M. Rockman, S. Tintori, H. Yomai|| Pohnpei, Federated States of Micronesia || 2024 || T. Nguyen, M. Rockman, S. Tintori, H. Yomai|| Japonica || near imperialis || 1 isolate || || || - || - || - | ||
+ | |- | ||
+ | | sp. 76|| 76 ||QG4628 || F/M || T. Nguyen, M. Rockman, S. Tintori, H. Yomai|| Pohnpei, Federated States of Micronesia || 2024 || T. Nguyen, M. Rockman, S. Tintori, H. Yomai|| || || 100s of isolates || || || - || - || - | ||
+ | |} | ||
+ | |||
− | |||
− | |||
'''Published phylogeny, up to sp. 21:''' | '''Published phylogeny, up to sp. 21:''' | ||
Line 118: | Line 183: | ||
</gallery> | </gallery> | ||
'''Updated phylogeny, up to sp. 32:''' | '''Updated phylogeny, up to sp. 32:''' | ||
+ | |||
http://wormtails.bio.nyu.edu/RhabditinaDB_Images/GenusTrees/CaenorhabditisTree.png | http://wormtails.bio.nyu.edu/RhabditinaDB_Images/GenusTrees/CaenorhabditisTree.png | ||
+ | |||
+ | |||
+ | '''2017 phylogeny of a subset of species, based on their genome sequences by Slos et al.''' | ||
+ | |||
+ | https://bmczool.biomedcentral.com/articles/10.1186/s40850-017-0013-2 | ||
+ | |||
+ | '''Stevens et al. 2019, with genomic data from 32 species''' | ||
+ | [https://onlinelibrary.wiley.com/doi/10.1002/evl3.110] | ||
+ | |||
+ | '''Stevens et al. 2020, adding <i>C. bovis</i>''' | ||
+ | [https://www.sciencedirect.com/science/article/pii/S0960982220301184#fig3] | ||
+ | |||
+ | '''Sloat et al. 2022, with genomic data from 36 species''' | ||
+ | [https://onlinelibrary.wiley.com/doi/10.1002/ece3.9124] | ||
+ | |||
+ | '''and the latest unpublished phylogeny''' | ||
+ | [http://caenorhabditis.org/?page_id=151]. Thank you Lewis! |
Revision as of 20:52, 22 March 2024
See RhabditinaDB for a comprehensive morphological and taxonomic database of Rhabditina, including Caenorhabditis
Species | number | Reference strain | Repro- duction | Collector | Location | Date | Isolated by | Supergroup (annotation incomplete) | Group (annotation incomplete) | Geographic distribution and available isolates (lab) | Inbred strain | Genome | Data (WORMBASE or other) | Publications (incomplete) | Other strains sequenced & other sequence data |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
elegans | a | N2 | H/M | - | - | - | - | Elegans | Elegans | world-wide (mostly temperate) distribution, 100s of isolates | N.A. | SEQUENCED Sanger WashU | WORMBASE | C. elegans Sequencing Consortium 1998 Science | >400 wild isolates sequenced, see CeNDR |
briggsae | b | AF16 | H/M | - | - | - | - | Elegans | Elegans | world-wide distribution, 100s of isolates | N.A. | SEQUENCED WashU | WORMBASE | Stein et al. 2003 | 37 wild isolates sequenced 30x (Cutter lab) ; All wild isolates sequenced, forthcoming in CaeNDR |
japonica | c | F/M | - | - | - | - | Elegans | Japonica | isolates from Japan (Yoshiga/Cutter) | DF5080 | SEQUENCED WashU | WORMBASE | - | - | |
remanei | d | F/M | - | - | - | - | Elegans | Elegans | USA/Canada, Europe, Japan, Taiwan, 100s of isolates | PB4641, PX356, PX349 | SEQUENCED WashU, Phillips | WORMBASE | Fierst et al. 2015 | approx 35 wild isolates sequenced | |
drosophilae | f | DF5077 | F/M | - | - | - | - | Drosophilae | rotting saguaro cactus in Arizona, a few isolates | DF5112 | SEQUENCED Blaxter | - | - | - | |
plicata | g | SB355 | F/M | - | - | - | - | base | - | - | SEQUENCED Blaxter | Caenorhabditis DB | - | - | |
auriculariae | NKZ352 | F/M | - | - | - | - | Auriculariae | sister to monodelphis | Platydema beetles in Japan; one strain at CGC | - | SEQUENCED Kikuchi | Dayi et al. 2021 | - | - | |
monodelphis | 1 | SB341 | F/M | J. Raschka | Berlin, Germany | 2001 | W. Sudhaus | Auriculariae | A second isolate from Norway (Félix) | JU1667 | SEQUENCED Blaxter | Caenorhabditis DB | Slos et al. BMC Zool. 2017 | - | |
sp. 2 | 2 | DF5070 | F/M | S. Wirth | Corsica, France | Oct 2001 | W. Sudhaus | Drosophilae | (sister of drosophilae) | 1 single isolate | - | SEQUENCED Blaxter | - | - | - |
angaria | 3 | PS1010 | F/M | - | - | 1990 | - | Angaria | 3 isolates from Florida USA | - | SEQUENCED CalTech | WORMBASE | Mortazavi et al. | - | |
brenneri | 4 | F/M | - | - | - | - | Elegans | Elegans | tropical, ~30 isolates (Felix, Cutter, Braendle) | PB2801, VX223-225, VX227 | SEQUENCED WashU | WORMBASE | - | VX strains sequenced but not yet assembled (Cutter lab); RNA seq for 10 isolates http://www.ncbi.nlm.nih.gov/sra/?term=SRP042651+Caenorhabditis | |
sinica | 5 | F/M | M.-A. Félix | Chengyang, Guangxi, China | 6 May 2005 | M.-A. Félix | Elegans | Elegans | Isolates from China, Vietnam (Cutter, Ailion, Félix) | JU800 | SEQUENCED Cutter Blaxter | WORMBASE | - | - | |
portoensis | 6 | EG4788 | F/M | M. Ailion, A.-J. Rodrigues | Amares, Portugal | 28 Mar 2007 | M. Ailion | Portugal, Spain, France, Ireland (Ailion, Félix, Braendle) | EG5626 | Sequenced Blaxter | - | - | - | ||
afra | 7 | JU1199 | F/M | M. Herrmann | Begoro, Ghana | Jun 2007 | M.-A. Félix | Elegans | Japonica | 2 isolates from West Africa (Félix) | JU1286 | SEQUENCED Blaxter | Caenorhabditis DB | - | - |
sp. 8 | 8 | QX1182 | F/M | M. Rockman | Backyard of 93 Mercer St., Jersey City, NJ, USA | 28 Jul 2007 | M. Rockman | Angaria | close to sp. 24 and 56 | Isolates from USA (Fitch), Europe (Braendle, Félix), Canada (Rockman) | JU3312 | SEQUENCED Blaxter | - | - | - |
nigoni | 9 | JU1325 | F/M | M.-A. Félix | Trivandrum Zoo, Kerala, India | 21 Dec 2007 | M.-A. Félix | Elegans | Elegans, sister of briggsae | Various wet tropical places from Yucatan to Singapore (Ailion, Félix, Inoue) | JU1422 | SEQUENCED Schwarz | OPEN SCIENCE FRAMEWORK | - | - |
doughertyi | 10 | JU1333 | F/M | M.-A. Félix | Angela Spice Garden, Kerala, India | 27 Dec 2007 | M.-A. Félix | Elegans | Elegans | 6 isolates from South India | JU1771 | SEQUENCED Blaxter | Caenorhabditis DB | - | RNA seq for JU1328 & JU1333 |
tropicalis | 11 | JU1373 | H/M | V. Robert, L. Sablé | Saint-Benoît, La Réunion | Jan 2008 | M.-A. Félix | Elegans | Elegans | Common in tropical regions (not so far on the African continent, one in Asia) | - | SEQUENCED WashU, etc | WORMBASE | - | All wild isolates sequenced, forthcoming in CaeNDR |
castelli | 12 | JU1426 | F/M | P. Châtelet | Nouragues Forest, French Guiana | May 2008 | M.-A. Félix | Angaria | Several isolates from French Guiana (Félix, Braendle, Cutter) | JU1956 | SEQUENCED Blaxter | Caenorhabditis DB | - | - | |
virilis | 13 | JU1528 | F/M | M.-A. Félix | Orsay apple orchard | 9 Sep 2008 | M.-A. Félix | Drosophilae | Several isolates from two locations in France | JU1968 | SEQUENCED Blaxter | Caenorhabditis DB | - | - | |
imperialis | 14 | EG5716 | F/M | D. Ailion | Moorea, French Polynesia | 24 Jul 2009 | M. Ailion | Elegans | Japonica | also Polynesia, Guadeloupe (Félix, Braendle) | EG5942-EG5947 | SEQUENCED Blaxter | - | - | - |
kamaaina | 15 | QG122 | F/M | M. Rockman | Near Hanalei Bay, Kauai, Hawaii, USA | 2 Aug 2009 | M. Rockman | Elegans | Elegans | Kauai and Maui, 2 isolates | QG2076, QG2077 | SEQUENCED Rockman | Caenorhabditis DB | - | |
wallacei | 16 | JU1873 | F/M | J.-B. Pénigault | Sanda Center, Bali, Indonesia | 11 Nov 2009 | J.-B. Pénigault | Elegans | Elegans | 2 isolates from Indonesia (Félix) | JU1898 | in assembly Schwarz | - | ||
nouraguensis | 17 | JU1825 | F/M | C. Braendle, M.-A. Félix | Nouragues Forest, French Guiana | 21 Nov 2009 | C. Braendle, M.-A. Félix | Elegans | Japonica | Many isolates from French Guiana | JU2079 | SEQUENCED Blaxter | Caenorhabditis DB | - | additional strains sequenced |
macrosperma | 18 | JU1857 | F/M | C. Braendle, M.-A. Félix | Nouragues Forest, French Guiana | 23 Nov 2009 | C. Braendle, M.-A. Félix | Elegans | Japonica | A few isolates from Nouragues, French Guiana | JU2083 | SEQUENCED Cutter | Caenorhabditis DB | - | - |
yunquensis | 19 | EG6142 | F/M | S. Dalton | El Yunque, Puerto Rico | 28 Mar 2010 | S. Dalton, M. Ailion | Elegans | Japonica | Puerto Rico | XZ1517-XZ1520 | SEQUENCED Blaxter | - | - | - |
guadeloupensis | 20 | NIC113 | F/M | C. Braendle | Soufrière Forest trail, Guadeloupe | Mar 2010 | C. Braendle | Guadeloupensis | Guadeloupe | SEQUENCED Blaxter | Caenorhabditis DB | - | resequencing required | ||
parvicauda | 21 | NIC134 | F/M | C. Gimond | Island of Sainte Marie, Madagascar | Dec 2010 | C. Braendle | base | Also Polynesia, Thailand and Caribbean (Félix) | NIC534 | SEQUENCED Blaxter | Caenorhabditis DB | Stevens et al. Evol Lett 2019 | - | |
latens | 23 | VX88 | F/M | G.-X. Wang | Jiufeng Village, Wuhan City, Hubei Province, China | 27 Oct 2009 | G.-X. Wang | Elegans | Elegans, sister of C. remanei | Several isolates from China (Cutter) | PX534, PX573, PX574, PX580 | SEQUENCED Phillips | Caenorhabditis DB | - | - |
agridulce | 24 | QG555 | F/M | A. Paaby | Santa Barbara, USA | July 2011 | A. Paaby | Angaria | close to sp. 8 and 56 | Isolates from California, Panama, Mexico (Rockman, Félix) | SEQUENCED Blaxter | - | - | - | |
sp. 25 | 25 | ZF1222 | F/M | A. Seah, T. Inoue | Singapore | 3 Sep 2011 | T. Inoue | Elegans | Japonica | 2 isolates from Singapore | ZF1457 | SEQUENCED Blaxter | - | - | - |
zanzibari | 26 | JU2161 | F/M | M.-A. Félix | Zanzibar, Tanzania | 9 Mar 2012 | M.-A. Félix | Elegans | Elegans | 5 isolates from Zanzibar | JU2190 | SEQUENCED Blaxter | Caenorhabditis DB | Stevens et al. Evol Lett 2019 | - |
sp. 27 | 27 | QX2263 | F/M | - | Buenos Aires, Argentina | 2 Mar 2012 | E. Andersen | Portoensis | Argentina | SEQUENCED Blaxter | - | - | - | ||
panamensis | 28 | QG702 | F/M | M. Rockman | Barro Colorado Island, Panama | 23 Apr 2012 | M. Rockman | Elegans | Japonica | several isofemale lines from Panama | QG2080, QG2081 | SEQUENCED Rockman | Caenorhabditis DB | Stevens et al. Evol Lett 2019 | - |
becei | 29 | QG704 | F/M | M. Rockman | Barro Colorado Island, Panama | 25 Apr 2012 | M. Rockman | Elegans | Japonica, sister of nouraguensis | many isofemale lines from Panama | QG2082, QG2083 | SEQUENCED Rockman | Caenorhabditis DB | Stevens et al. Evol Lett 2019 | >400 RIAILs, Rockman lab |
sp. 30 | 30 | DF5152 | F/M | - | Gallon Jug, Belize | 15 Nov 2012 | K. Kiontke | Drosophilae | 4 isofemale lines from Belize | ongoing (K. Kiontke) | SEQUENCED Blaxter | - | - | - | |
uteleia | 31 | JU2469 | F/M | - | Madre de Dios, Peru | Jan 2013 | L. Frézal | Guadeloupensis | 2 isolates from Peru | JU2585 | SEQUENCED Blaxter | Caenorhabditis DB | Stevens et al. Evol Lett 2019 | - | |
sulstoni | 32 | SB454 | F/M | - | East Africa? | Feb 2013 | W. Sudhaus | Elegans | Japonica, sister of afra | 1 isolate, from the gut of the millipede Archispirostreptus gigas | JU2788 | SEQUENCED Blaxter | Caenorhabditis DB | Stevens et al. Evol Lett 2019 | - |
sp. 33 | 33 | BRC20065 | F/M | J. Wang | Taiwan | 24 May 2012 | J. Wang | Elegans | Elegans | 1 isolate from Taiwan | BRC20066 | IN SEQUENCING Wang Tsai | - | - | - |
inopinata | 34 | NK74SC | F/M | N. Kanzaki | Shigaki Island, Japan | May 2013 | N. Kanzaki | Elegans | Elegans, with C. sp. 35 sister of C. elegans | 1 isolate from Japan. Associated with fig wasps and Ficus septica | - | SEQUENCED Kanzaki, Kikuchi | Caenorhabditis DB | Kanzaki et al. Nat Comm 2019 | - |
sp. 35 | 35 | DF5171 | F/M | - | Banda Ache, Indonesia | Aug 2013 | N. Kanzaki | Elegans | Elegans, with C. sp. 34 sister of C. elegans | 2 Isolates from Indonesia, associated with Ficus hispida | - | IN SEQUENCING Kanzaki, Kikuchi | - | - | - |
niphades | 36 | NK02NV | F/M | N. Kanzaki | Tokyo, Japan | Apr 2013 | N. Kanzaki | Elegans | Japonica | 1 isolate from Japan. Associated with the weevil Niphades variegatus | - | SEQUENCED Kanzaki, Kikuchi | - | Sun et al. BMC Genomics 2022 | - |
dolens | 37 | NIC394 | F/M | C. Braendle, A. Cutter, R. Jovelin, N. Callemeyn | Nouragues National Reserve, French Guiana | 18 Apr 2013 | C. Braendle | Angaria group | Angaria | 1 isolate from French Guiana | - | SEQUENCED Blaxter | - | - | - |
quiockensis | 38 | JU2745 | F/M | F. Besnard | Guadeloupe (Basse Terre) | 09 June 2014 | F. Besnard | Angaria | 1 isolate from Guadeloupe | JU2809 | SEQUENCED Blaxter | Caenorhabditis DB | Stevens et al. Evol Lett 2019 | - | |
waitukubuli | 39 | NIC564 | F/M | C. Braendle | Dominica | 13 May 2014 | C. Braendle | Elegans | Japonica | 1 isolate from Dominique | - | SEQUENCED Blaxter | Caenorhabditis DB | Stevens et al. Evol Lett 2019 | - |
tribulationis | 40 | JU2774 | F/M | J.-B. Pénigault | Danbulla, Australia | 08 August 2014 | L. Frézal | Elegans | Elegans | 5 isolates from Australia, in fresh or rotting figs | JU2818 | SEQUENCED Blaxter | Caenorhabditis DB | Stevens et al. Evol Lett 2019 | - |
sp. 41 | 41 | BRC20276 | F/M | - | Solomon Islands | October 2014 | J. Wang | Elegans | Elegans | 2 isolates from Solomon Islands | - | IN SEQUENCING Wang Tsai | - | - | - |
astrocarya | 42 | NIC1040 | F/M | C. Braendle/A. Cutter | Nouragues Forest, French Guiana | August 2014 | C. Braendle | base | one isolate from French Guiana | - | SEQUENCED Blaxter | - | - | - | |
vivipara | 43 | NIC1070 | F/M | C. Gosse | Chichén Itzá, Yucatán, Mexico | 17 October 2014 | C. Braendle | Portoensis | 2 isolates from Mexico; in orange berries | NIC1581, NIC2055 | SEQUENCED Blaxter | Caenorhabditis DB | Stevens et al. Evol Lett 2019 | resequenced (PACBIO) Braendle | |
sp. 44 | 44 | BRC20300 | F/M | J. Wang | Shihting mountain near Taipei City, Taiwan | Dec 2014 | J. Wang | Elegans | Elegans | one isolate from Taiwan; in flowers | - | IN SEQUENCING Wang Tsai | - | - | - |
sp. 45 | 45 | NIC759 | F/M | C. Braendle | Sylvania, Dominica | 16 May 2014 | C. Braendle | Guadeloupensis | sister species of C. guadeloupensis | one isolate from Dominica; in Cecropia fruit | - | SEQUENCED Blaxter | - | - | - |
sp. 46 | 46 | NIC1120 | F/M | C. Braendle | Macchu Picchu, Aguas Calientes, Peru | 7 April 2015 | C. Braendle | Elegans | Japonica | one isolate from Peru | - | SEQUENCED Blaxter | - | - | - |
sp. 47 | 47 | NIC1127 | F/M | C. Braendle | Tambopata region, Amazon, Peru | 7 April 2015 | C. Braendle | Angaria | one isolate from Peru | - | SEQUENCED Blaxter | - | - | - | |
sp. 48 | 48 | BRC20359 | F/M | J. Wang | Khao Yai National park, Thailand | 4 May 2015 | J. Wang | Elegans | Elegans | one isolate from Thailand | - | SSEQUENCED Blaxter | - | - | - |
sp. 49 | 49 | BRC20376 | F/M | J. Wang | Solomon Islands | - | J. Wang | Elegans | Japonica | one isolate Solomon Islands | - | SEQUENCED Blaxter | - | - | - |
sp. 50 | 50 | BRC20387 | F/M | Dai | near Taipei City, Taiwan | 18 October 2015 | J. Wang | Elegans | Japonica | two isolates from Taiwan | - | Sequencing_planned Blaxter | - | - | - |
sp. 51 | 51 | QG2915 | F/M | M. Rockman | Australia | 2017 | M Rockman | Elegans | Elegans | two isolates from Australia | QG2939 | SEQUENCED Blaxter | - | - | - |
sp. 52 | 52 | QG2933 | F/M | M. Rockman | Australia | 2017 | M Rockman | one isolate from Australia | QG2935 | Sequencing_planned Blaxter | - | - | - | ||
oiwi | 53 | ECA821 | F/M | E. Andersen | Oahu, Hawaii | 2017 | T Crombie | Elegans | Elegans, sister of C. kamaaina | several isolates from Oahu and Kauai | - | SEQUENCED Blaxter | - | - | - |
sp. 54 | 54 | BRC20468 | F/M | Hsueh, Yen-Ping | Miaoli County?, Taiwan | 18 August 2016 | J Wang | Elegans | Elegans | - | SEQUENCED Blaxter | - | - | - | |
sp. 55 | 55 | JU3317 | F/M | M.-A. Félix | Pugao Laozhai, Yuanyang, Yunnan, China | 5 March 2018 | M.-A. Félix | Elegans | Elegans | one isolate from Yunnan, China | JU3404 | SEQUENCED Blaxter | - | - | - |
sp. 56 | 56 | JU2215 | F/M | M. Joron | Tarapoto, Peru | October 2012 | L. Frézal | Angaria | close to sp. 8 and 24 | one isolate from Peru | (JU3313 8x inbred and very sick) | SEQUENCED Blaxter | - | - | |
krikudae | 57 | QG3050 | F/M | M. Rockman | Barro Colorado Island, Panama | August 2018 | M. Rockman | Auriculariae | sister to monodelphis + auricularia | two isolates from Panama | QG3077 | - | - | - | |
sp. 58 | 58 | RS6130 | F/M | M. Herrmann | Bolivia | 2019 | M. Herrmann | close to C. astrocarya | JU3779 or JU3880 | sent to Blaxter | - | - | - | ||
sp. 59 | 59 | RS6131 | F/M | M. Herrmann | Bolivia | 2019 | M. Herrmann | Elegans | Japonica, close to C. becei | JU3778 | sent to Blaxter | - | - | - | |
sp. 60 | 60 | QG3550 | F/M | M. Rockman | Costa Rica | 2019 | M. Rockman | Elegans | Japonica | one isolate | QG4242 | SEQUENCED Rockman | - | - | - |
sp. 61 | 61 | JU4045 | F/M | M.-A. Félix | Sapa area, Vietnam | 2019 | M.-A. Félix | Elegans | Elegans | one isolate | JU4110 | - | - | - | |
sp. 62 | 62 | JU4050 | F/M | M.-A. Félix | Sapa area, Vietnam | 2019 | M.-A. Félix | Elegans | Elegans | one isolate | JU4112 | - | - | - | |
sp. 63 | 63 | JU4056 | F/M | M.-A. Félix | Sapa area, Vietnam | 2019 | M.-A. Félix | Elegans | Elegans, close to sp. 33 | one isolate | JU4113 | - | - | - | |
sp. 64 | 64 | JU4061 | F/M | M.-A. Félix | Sapa area, Vietnam | 2019 | M.-A. Félix | Portoensis | one isolate | JU4117 | SEQUENCED Braendle | - | - | - | |
sp. 65 | 65 | JU4086 | F/M | M.-A. Félix | Dalat area, Vietnam | 2019 | M.-A. Félix | Elegans | Elegans | four isolates from Vietnam | JU4118 | - | - | - | |
sp. 66 | 66 | JU4096 | F/M | M.-A. Félix | Dalat area, Vietnam | 2019 | M.-A. Félix | Elegans | Elegans, close to sp. 48 and brenneri | seven isolates from Vietnam | JU4121 | - | - | - | |
sp. 67 | 67 | QG4215 | F/M | M. Rockman, E. Andersen | Paluma Range, Australia | 2020 | M. Rockman | Elegans | Japonica, near sp. 49 and 50 | one isolate | QG4243 | - | - | - | |
sp. 68 | 68 | NIC2161 | F/M | C. Braendle, A. Cutter | Nouragues Natural Reserve, French Guiana | 2014 | C. Braendle | Drosophilae | near sp. 30 | one isolate | ongoing | - | - | - | |
sp. 69 | 69 | NIC2374 | F/M | C. Braendle | Nouragues Natural Reserve, French Guiana | 2021 | C. Braendle | Angaria | near dolens | one isolate | ongoing | - | - | - | |
sp. 70 | 70 | TT3412 | F/M | S. Nagarajan, T. Pathak, K. Puraje, M.-A. Félix | Neral, Marahashtra, India | 2022 | T. Pathak, M.-A. Félix, S. Koushika | closest to parvicauda | one isolate | JU4419-21 | - | - | - | ||
sp. 71 | 71 | BRC20593 | F/M | J. Wang | Vietnam | 2023 | J. Wang | 2 isolates | - | - | - | ||||
sp. 72 | 72 | QG4708 | F/M | T. Nguyen, M. Rockman, S. Tintori, H. Yomai | Pohnpei, Federated States of Micronesia | 2024 | T. Nguyen, M. Rockman, S. Tintori, H. Yomai | 12 isolates | - | - | - | ||||
sp. 73 | 73 | QG4797 | F/M | T. Nguyen, M. Rockman, S. Tintori, H. Yomai | Pohnpei, Federated States of Micronesia | 2024 | T. Nguyen, M. Rockman, S. Tintori, H. Yomai | Japonica | near imperialis | 11 isolates | - | - | - | ||
sp. 74 | 74 | QG4644 | F/M | T. Nguyen, M. Rockman, S. Tintori, H. Yomai | Pohnpei, Federated States of Micronesia | 2024 | T. Nguyen, M. Rockman, S. Tintori, H. Yomai | Japonica | near imperialis | 22 isolates | - | - | - | ||
sp. 75 | 75 | QG4848 | F/M | T. Nguyen, M. Rockman, S. Tintori, H. Yomai | Pohnpei, Federated States of Micronesia | 2024 | T. Nguyen, M. Rockman, S. Tintori, H. Yomai | Japonica | near imperialis | 1 isolate | - | - | - | ||
sp. 76 | 76 | QG4628 | F/M | T. Nguyen, M. Rockman, S. Tintori, H. Yomai | Pohnpei, Federated States of Micronesia | 2024 | T. Nguyen, M. Rockman, S. Tintori, H. Yomai | 100s of isolates | - | - | - |
Published phylogeny, up to sp. 21:
Published phylogeny from Kiontke et al. 2011 with species names from Félix, Braendle & Cutter 2014
Félix, Braendle @ Cutter PLoS One 2014 http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0094723
Updated phylogeny, up to sp. 32:
http://wormtails.bio.nyu.edu/RhabditinaDB_Images/GenusTrees/CaenorhabditisTree.png
2017 phylogeny of a subset of species, based on their genome sequences by Slos et al.
https://bmczool.biomedcentral.com/articles/10.1186/s40850-017-0013-2
Stevens et al. 2019, with genomic data from 32 species [1]
Stevens et al. 2020, adding C. bovis [2]
Sloat et al. 2022, with genomic data from 36 species [3]
and the latest unpublished phylogeny [4]. Thank you Lewis!